CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH24392
KRH29374
KRH51475
KRH56614
KRH60786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	KRG93305	AT3G27960.1	21798944
AT1G71970.1	KRH56614	AT3G27960.1	21798944
AT1G71970.1	KRH24392	AT4G39050.1	21798944
AT1G71970.1	KRH29374	AT4G39050.1	21798944
AT1G71970.1	KRH51475	AT4G39050.1	21798944
AT1G71970.1	KRH60786	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91792	Soybean	nucleus, plastid	88.24	86.54
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	47.55	48.74
VIT_18s0075g00270.t01	Wine grape	plastid	36.76	40.54
AT1G22680.1	Thale cress	plastid	36.76	40.54
CDY03667	Canola	nucleus, plastid	40.2	38.86
Bra008000.1-P	Field mustard	nucleus, plastid	40.2	38.86
CDX82197	Canola	nucleus, plastid	39.22	38.84
CDX72851	Canola	nucleus, plastid	39.71	38.76
PGSC0003DMT400036445	Potato	plastid	37.25	38.38
CDX96367	Canola	nucleus, plastid	41.18	38.36
Bra016094.1-P	Field mustard	nucleus, plastid	40.69	37.9
CDY36668	Canola	nucleus, plastid	37.75	37.75
Solyc06g065340.1.1	Tomato	nucleus, plastid	41.18	37.5
AT1G71970.1	Thale cress	plastid	40.69	36.89
PGSC0003DMT400067168	Potato	nucleus, plastid	40.69	36.4
Bra003902.1-P	Field mustard	nucleus, plastid	35.78	36.32
CDX68291	Canola	nucleus, plastid	35.29	35.82
Solyc11g018710.1.1	Tomato	nucleus, plastid	33.82	35.03

Protein Annotations

EMBL:ACUP02006646	EnsemblPlants:KRH34993	EnsemblPlantsGene:GLYMA_10G217400	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1
PFAM:PF05097	ProteinID:KRH34993	ProteinID:KRH34993.1	SEG:seg	UniParc:UPI00023CD602	UniProt:I1LD85
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:44909490..44910754

Molecular Weight (calculated)

22925.0 Da

IEP (calculated)

10.177

GRAVY (calculated)

-0.594

Length

204 amino acids

Sequence
(BLAST)

001: MDSSSSASVS QHAKVVPKQF DIFFHAGRYP SSRRTHSSSS SSSFESFYFP EDPLLSPASP LRFSGVPFSW EHLPGIPKKQ NSKKKLQESS LKLLPLPPPT
101: TTHCSSKKHS HEETRIRKKN SIQSVFQRDP FFAALVECSK DDNEEITSRN LWNGAKVPIR SISDRFGFIS LYASCKRTCA VSESLVYLPS SRRSTCEHVS
201: PRSL

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.