Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016094.1-P | Field mustard | nucleus, plastid | 76.44 | 78.54 |
| CDX96367 | Canola | nucleus, plastid | 75.56 | 77.63 |
| Bra003902.1-P | Field mustard | nucleus, plastid | 68.44 | 76.62 |
| CDX68291 | Canola | nucleus, plastid | 68.0 | 76.12 |
| Bra008000.1-P | Field mustard | nucleus, plastid | 71.11 | 75.83 |
| CDY03667 | Canola | nucleus, plastid | 71.11 | 75.83 |
| CDX72851 | Canola | nucleus, plastid | 70.22 | 75.6 |
| CDY36668 | Canola | nucleus, plastid | 68.44 | 75.49 |
| CDX82197 | Canola | nucleus, plastid | 68.44 | 74.76 |
| AT1G22680.1 | Thale cress | plastid | 45.33 | 55.14 |
| KRG91792 | Soybean | nucleus, plastid | 37.78 | 40.87 |
| KRH34993 | Soybean | nucleus, plastid | 36.89 | 40.69 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 33.33 | 37.69 |
| PGSC0003DMT400036445 | Potato | plastid | 32.0 | 36.36 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 30.22 | 34.52 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 34.22 | 34.38 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 33.33 | 32.89 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 25.33 | 30.81 |
Protein Annotations
| MapMan:35.2 | EntrezGene:843528 | UniProt:A0A178WGE0 | ProteinID:AAG52218.1 | ProteinID:AEE35259.1 | ArrayExpress:AT1G71970 |
| EnsemblPlantsGene:AT1G71970 | RefSeq:AT1G71970 | TAIR:AT1G71970 | RefSeq:AT1G71970-TAIR-G | EnsemblPlants:AT1G71970.1 | TAIR:AT1G71970.1 |
| EMBL:AY102115 | EMBL:AY143823 | InterPro:DUF688 | GO:GO:0008150 | RefSeq:NP_177342.1 | ProteinID:OAP17417.1 |
| PFAM:PF05097 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | UniProt:Q9C8W5 | UniParc:UPI00000AC663 | SEG:seg |
Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
Coordinates
chr1:+:27092893..27094035
Molecular Weight (calculated)
24616.7 Da
IEP (calculated)
10.533
GRAVY (calculated)
-0.738
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.