Factsheet for Bra016094.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010714.1-P
Bra025315.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G71970.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G71970.1	Bra033597.1-P	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96367	Canola	nucleus, plastid	96.8	96.8
Bra008000.1-P	Field mustard	nucleus, plastid	76.26	79.15
Bra003902.1-P	Field mustard	nucleus, plastid	70.78	77.11
AT1G71970.1	Thale cress	plastid	78.54	76.44
KRH34993	Soybean	nucleus, plastid	37.9	40.69
KRG91792	Soybean	nucleus, plastid	38.36	40.38
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	34.7	38.19
PGSC0003DMT400036445	Potato	plastid	32.88	36.36
Solyc11g018710.1.1	Tomato	nucleus, plastid	31.51	35.03
Solyc06g065340.1.1	Tomato	nucleus, plastid	33.79	33.04
PGSC0003DMT400067168	Potato	nucleus, plastid	33.79	32.46
VIT_18s0075g00270.t01	Wine grape	plastid	27.4	32.43

Protein Annotations

EnsemblPlants:Bra016094.1	EnsemblPlants:Bra016094.1-P	EnsemblPlantsGene:Bra016094	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1
PFAM:PF05097	SEG:seg	UniParc:UPI0002541B65	UniProt:M4DHW7	MapMan:35.2	:

Description

AT1G71970 (E=7e-072) | unknown protein

Coordinates

chrA07:+:19451184..19451843

Molecular Weight (calculated)

24393.5 Da

IEP (calculated)

10.426

GRAVY (calculated)

-0.805

Length

219 amino acids

Sequence
(BLAST)

001: MDSSRTRTLA RRSDPVNFPA KTNTSSRRSL SSSSFSSFSS CSSSSLVFQG DSPLNSPATP LRLLGVPFSW EQLPGKPKDY SHRLNHRLNK ESSLILPLPP
101: HRSTHFPVTV KNKKSNSLSK KNSFPVTEKD PFAAALLECS KDDDEDEEDG EDHEVDRRFR GNSGGSSKAL TKSSIGDRFG LVSLYGSCRR TCTVSESIVY
201: LPRTRKAASY DHLLPRRRR

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.