Factsheet for PGSC0003DMT400067168

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400008772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT1G71970.1	PGSC0003DMT400008772	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065340.1.1	Tomato	nucleus, plastid	91.67	93.3
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	38.16	43.72
PGSC0003DMT400036445	Potato	plastid	37.72	43.43
KRG91792	Soybean	nucleus, plastid	38.16	41.83
KRH34993	Soybean	nucleus, plastid	36.4	40.69
VIT_18s0075g00270.t01	Wine grape	plastid	29.82	36.76
AT1G22680.1	Thale cress	plastid	28.95	35.68
Bra003902.1-P	Field mustard	nucleus, plastid	30.26	34.33
Bra008000.1-P	Field mustard	nucleus, plastid	31.58	34.12
CDY03667	Canola	nucleus, plastid	31.58	34.12
CDX72851	Canola	nucleus, plastid	31.14	33.97
Bra016094.1-P	Field mustard	nucleus, plastid	32.46	33.79
CDX96367	Canola	nucleus, plastid	32.02	33.33
CDX68291	Canola	nucleus, plastid	29.39	33.33
AT1G71970.1	Thale cress	plastid	32.89	33.33
CDY36668	Canola	nucleus, plastid	29.39	32.84
CDX82197	Canola	nucleus, plastid	29.39	32.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400067168	EnsemblPlantsGene:PGSC0003DMG400026113	EntrezGene:102593915	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1
PFAM:PF05097	PGSC:PGSC0003DMG400026113	RefSeq:XP_006353623.1	SEG:seg	UniParc:UPI0002955B16	UniProt:M1CGT5
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026113]

Coordinates

chr6:+:46533256..46534431

Molecular Weight (calculated)

25456.6 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.748

Length

228 amino acids

Sequence
(BLAST)

001: MASTLTTPTP TPTNDVDDHQ SHDTTFSTPF FRPPPPTTRR STPSSLSSSP SHSSNSSFGS SLSFHDILDD HNSPISPTTP LQFPKGVPFS WEKIPGIPKQ
101: IFSKKNNTTT TLGQLLPLMP PPCGNGNNVP NNSSKKITSF LDEFSPRKNV AKSFRKDPFF AAFVECSKDD QQQYDDDIWK NSSKVPSIRS LSDRFGFISM
201: YTSCKRTCTV SESIVYLPRS RNNYSRKY

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.