Factsheet for Bra008000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010714.1-P
Bra025315.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G71970.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G71970.1	Bra033597.1-P	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03667	Canola	nucleus, plastid	100.0	100.0
Bra016094.1-P	Field mustard	nucleus, plastid	79.15	76.26
Bra003902.1-P	Field mustard	nucleus, plastid	71.56	75.12
AT1G71970.1	Thale cress	plastid	75.83	71.11
KRG91792	Soybean	nucleus, plastid	40.76	41.35
KRH34993	Soybean	nucleus, plastid	38.86	40.2
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	36.49	38.69
PGSC0003DMT400036445	Potato	plastid	34.6	36.87
Solyc11g018710.1.1	Tomato	nucleus, plastid	32.7	35.03
VIT_18s0075g00270.t01	Wine grape	plastid	28.91	32.97
Solyc06g065340.1.1	Tomato	nucleus, plastid	34.12	32.14
PGSC0003DMT400067168	Potato	nucleus, plastid	34.12	31.58

Protein Annotations

EnsemblPlants:Bra008000.1	EnsemblPlants:Bra008000.1-P	EnsemblPlantsGene:Bra008000	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1
PFAM:PF05097	SEG:seg	UniParc:UPI0002546E19	UniProt:M4CUV5	MapMan:35.2	:

Description

AT1G71970 (E=2e-065) | unknown protein

Coordinates

chrA02:+:12449699..12450334

Molecular Weight (calculated)

23209.3 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.611

Length

211 amino acids

Sequence
(BLAST)

001: MDSSKSRLVA RRSDPANFPA KKSISSRRSL SSSSSSFSSC SSSSLVFPGS PLNSPATPFG LIGVPFAWEQ LPGKPKDYSH RLNHRRNNES SVILPLPPHR
101: SITFPVTGKN HKSNYATKKS SSPVTATEKD PFAAALLECS KDDDEDEEDV DRRFRGSSKA LVKNSISDRF GLVSLYGSCR RTCAVSESIV YLPRPGKAAL
201: YDHLLLPRRH R

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.