Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 | |
| PGSC0003DMT400008772 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71970.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
| AT1G71970.1 | PGSC0003DMT400008772 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 85.35 | 85.79 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 43.43 | 37.72 |
| AT1G22680.1 | Thale cress | plastid | 34.85 | 37.3 |
| KRH34993 | Soybean | nucleus, plastid | 38.38 | 37.25 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 37.37 | 37.19 |
| KRG91792 | Soybean | nucleus, plastid | 38.89 | 37.02 |
| Bra008000.1-P | Field mustard | nucleus, plastid | 36.87 | 34.6 |
| CDY03667 | Canola | nucleus, plastid | 36.87 | 34.6 |
| CDX72851 | Canola | nucleus, plastid | 36.36 | 34.45 |
| CDX82197 | Canola | nucleus, plastid | 34.34 | 33.01 |
| Bra016094.1-P | Field mustard | nucleus, plastid | 36.36 | 32.88 |
| CDX96367 | Canola | nucleus, plastid | 36.36 | 32.88 |
| AT1G71970.1 | Thale cress | plastid | 36.36 | 32.0 |
| CDY36668 | Canola | nucleus, plastid | 31.82 | 30.88 |
| CDX68291 | Canola | nucleus, plastid | 30.81 | 30.35 |
| Bra003902.1-P | Field mustard | nucleus, plastid | 29.8 | 29.35 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 27.27 | 29.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036445 | EnsemblPlantsGene:PGSC0003DMG400014033 | EntrezGene:102605876 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PGSC:PGSC0003DMG400014033 |
| RefSeq:XP_006351931.1 | SEG:seg | UniParc:UPI0002966C5D | UniProt:M1B3M9 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014033]
Coordinates
chr11:+:11430950..11431819
Molecular Weight (calculated)
22442.1 Da
IEP (calculated)
10.390
GRAVY (calculated)
-0.889
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTSPTTNT TPRYGQRATT FSTPIFTLSS TTPSHSSFES LSIYDQKGVP FSWEHIPGIP KQQSSRKNSS SLSQLLPLPP PSRNPPNSSK KIQRLRDEFS
101: PRKSSTTNEG FKKDPFFAAF VECSKDHQEH HEDFSDMWKN TTTSSSKVMN SSARSLSDKF GFMNMYASCK RTCTVSESIV YLPRSRNYDL LRTRRTSQ
101: PRKSSTTNEG FKKDPFFAAF VECSKDHQEH HEDFSDMWKN TTTSSSKVMN SSARSLSDKF GFMNMYASCK RTCTVSESIV YLPRSRNYDL LRTRRTSQ
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.