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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • nucleus 2
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016094.1-P Field mustard nucleus, plastid 96.8 96.8
CDX72851 Canola nucleus, plastid 82.65 86.6
CDY03667 Canola nucleus, plastid 76.71 79.62
CDX82197 Canola nucleus, plastid 74.43 79.13
CDY36668 Canola nucleus, plastid 72.6 77.94
CDX68291 Canola nucleus, plastid 69.86 76.12
AT1G71970.1 Thale cress plastid 77.63 75.56
KRH34993 Soybean nucleus, plastid 38.36 41.18
KRG91792 Soybean nucleus, plastid 38.81 40.87
VIT_18s0075g00250.t01 Wine grape nucleus, plastid 35.16 38.69
PGSC0003DMT400036445 Potato plastid 32.88 36.36
Solyc11g018710.1.1 Tomato nucleus, plastid 31.51 35.03
VIT_18s0075g00270.t01 Wine grape plastid 27.85 32.97
Solyc06g065340.1.1 Tomato nucleus, plastid 33.33 32.59
PGSC0003DMT400067168 Potato nucleus, plastid 33.33 32.02
Protein Annotations
EnsemblPlants:CDX96367EnsemblPlantsGene:GSBRNA2T00102519001InterPro:DUF688PANTHER:PTHR33696PANTHER:PTHR33696:SF1PFAM:PF05097
ProteinID:CDX96367ProteinID:CDX96367.1SEG:segUniParc:UPI0004EDF722MapMan:35.2:
Description
BnaA07g29780D
Coordinates
chrLK031894:+:501601..502324
Molecular Weight (calculated)
24307.3 Da
IEP (calculated)
10.460
GRAVY (calculated)
-0.833
Length
219 amino acids
Sequence
(BLAST)
001: MDSSRTRTLA RRSDPVNFPA KTNNSSRRSL SSSSFSSFSS CSSSSLVFQG GSPLNSPASP LRLLGVPFSW EQLPGKPKDY SHRLNHRQNN DSSVILPLPP
101: HRSTHFPVTV KNKKSNSLSK KNSFPVTEKD PFAAALLECS KDDDEDEEDG EDHEVDRRFR GNSGGSSKAL TKSSIGDRFG LVSLYGSCRR TCTVSESIVY
201: LPRTRKAASY DHLLPRRRR
Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.