Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra016094.1-P | Field mustard | nucleus, plastid | 96.8 | 96.8 |
CDX72851 | Canola | nucleus, plastid | 82.65 | 86.6 |
CDY03667 | Canola | nucleus, plastid | 76.71 | 79.62 |
CDX82197 | Canola | nucleus, plastid | 74.43 | 79.13 |
CDY36668 | Canola | nucleus, plastid | 72.6 | 77.94 |
CDX68291 | Canola | nucleus, plastid | 69.86 | 76.12 |
AT1G71970.1 | Thale cress | plastid | 77.63 | 75.56 |
KRH34993 | Soybean | nucleus, plastid | 38.36 | 41.18 |
KRG91792 | Soybean | nucleus, plastid | 38.81 | 40.87 |
VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 35.16 | 38.69 |
PGSC0003DMT400036445 | Potato | plastid | 32.88 | 36.36 |
Solyc11g018710.1.1 | Tomato | nucleus, plastid | 31.51 | 35.03 |
VIT_18s0075g00270.t01 | Wine grape | plastid | 27.85 | 32.97 |
Solyc06g065340.1.1 | Tomato | nucleus, plastid | 33.33 | 32.59 |
PGSC0003DMT400067168 | Potato | nucleus, plastid | 33.33 | 32.02 |
Protein Annotations
EnsemblPlants:CDX96367 | EnsemblPlantsGene:GSBRNA2T00102519001 | InterPro:DUF688 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PFAM:PF05097 |
ProteinID:CDX96367 | ProteinID:CDX96367.1 | SEG:seg | UniParc:UPI0004EDF722 | MapMan:35.2 | : |
Description
BnaA07g29780D
Coordinates
chrLK031894:+:501601..502324
Molecular Weight (calculated)
24307.3 Da
IEP (calculated)
10.460
GRAVY (calculated)
-0.833
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSRTRTLA RRSDPVNFPA KTNNSSRRSL SSSSFSSFSS CSSSSLVFQG GSPLNSPASP LRLLGVPFSW EQLPGKPKDY SHRLNHRQNN DSSVILPLPP
101: HRSTHFPVTV KNKKSNSLSK KNSFPVTEKD PFAAALLECS KDDDEDEEDG EDHEVDRRFR GNSGGSSKAL TKSSIGDRFG LVSLYGSCRR TCTVSESIVY
201: LPRTRKAASY DHLLPRRRR
101: HRSTHFPVTV KNKKSNSLSK KNSFPVTEKD PFAAALLECS KDDDEDEEDG EDHEVDRRFR GNSGGSSKAL TKSSIGDRFG LVSLYGSCRR TCTVSESIVY
201: LPRTRKAASY DHLLPRRRR
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.