Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003902.1-P | Field mustard | nucleus, plastid | 97.01 | 97.01 |
| CDY36668 | Canola | nucleus, plastid | 88.06 | 86.76 |
| CDY03667 | Canola | nucleus, plastid | 75.12 | 71.56 |
| CDX82197 | Canola | nucleus, plastid | 73.13 | 71.36 |
| CDX96367 | Canola | nucleus, plastid | 76.12 | 69.86 |
| CDX72851 | Canola | nucleus, plastid | 72.64 | 69.86 |
| AT1G71970.1 | Thale cress | plastid | 76.12 | 68.0 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 38.31 | 38.69 |
| KRG91792 | Soybean | nucleus, plastid | 36.82 | 35.58 |
| KRH34993 | Soybean | nucleus, plastid | 35.82 | 35.29 |
| PGSC0003DMT400036445 | Potato | plastid | 30.35 | 30.81 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 27.36 | 29.73 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 32.84 | 29.46 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 28.86 | 29.44 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 33.33 | 29.39 |
Protein Annotations
| EnsemblPlants:CDX68291 | EnsemblPlantsGene:GSBRNA2T00099575001 | InterPro:DUF688 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PFAM:PF05097 |
| PFscan:PS51257 | ProteinID:CDX68291 | ProteinID:CDX68291.1 | SEG:seg | UniParc:UPI0004EDBDFA | MapMan:35.2 |
Description
BnaA07g23310D
Coordinates
chrLK031787:-:4815545..4816150
Molecular Weight (calculated)
22153.2 Da
IEP (calculated)
10.888
GRAVY (calculated)
-0.686
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSRTLIVT RRSDPVKKNI SSRRSLSSSP SFSSCSSSSL VFPGDSPLNS PITPLHLLGV PFSWEQLPGK PKDYSHRLNN HRGNRESSLI LPLPPHRSTT
101: FPVTGKNHKS NNSTKKNRFP VTEKDPFAAA LLECSKGDDY DGNSSGSRKV LAKGSFSNRF GLVNLYGSCR RSCSVTESIV QLPGPEKAAS YDHLLLPRRR
201: R
101: FPVTGKNHKS NNSTKKNRFP VTEKDPFAAA LLECSKGDDY DGNSSGSRKV LAKGSFSNRF GLVNLYGSCR RSCSVTESIV QLPGPEKAAS YDHLLLPRRR
201: R
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.