Factsheet for Bra003902.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010714.1-P
Bra025315.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G71970.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G71970.1	Bra033597.1-P	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68291	Canola	nucleus, plastid	97.01	97.01
Bra008000.1-P	Field mustard	nucleus, plastid	75.12	71.56
Bra016094.1-P	Field mustard	nucleus, plastid	77.11	70.78
AT1G71970.1	Thale cress	plastid	76.62	68.44
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	38.81	39.2
KRG91792	Soybean	nucleus, plastid	37.81	36.54
KRH34993	Soybean	nucleus, plastid	36.32	35.78
Solyc06g065340.1.1	Tomato	nucleus, plastid	33.83	30.36
VIT_18s0075g00270.t01	Wine grape	plastid	27.86	30.27
PGSC0003DMT400067168	Potato	nucleus, plastid	34.33	30.26
PGSC0003DMT400036445	Potato	plastid	29.35	29.8
Solyc11g018710.1.1	Tomato	nucleus, plastid	28.86	29.44

Protein Annotations

EnsemblPlants:Bra003902.1	EnsemblPlants:Bra003902.1-P	EnsemblPlantsGene:Bra003902	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1	PFscan:PS51257
SEG:seg	UniParc:UPI000254181D	UniProt:M4CI69	MapMan:35.2	:	:

Description

AT1G71970 (E=6e-044) | unknown protein

Coordinates

chrA07:-:15638831..15639436

Molecular Weight (calculated)

22063.0 Da

IEP (calculated)

10.835

GRAVY (calculated)

-0.697

Length

201 amino acids

Sequence
(BLAST)

001: MDSSRTLIVT SRSDPVKKNI SSRRSLSSSS SFSSCSSSSL VFPGDSPLNS PTTPLRLLGV PFSWEQLPGK PKDYSHRLNN HRGNRESSLI LPLPPHRSTT
101: FPVTGKNHKS NNPTKKNKFP VTEKDPFAAA LLECSKGDDY DGNSSGSRKV LAKGSFSNRF GLVNLYGSCR RSCSVTESIV QLPGPEKAAS YDHLLLPRRR
201: R

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.