CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH24392
KRH29374
KRH51475
KRH56614
KRH60786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	KRG93305	AT3G27960.1	21798944
AT1G71970.1	KRH56614	AT3G27960.1	21798944
AT1G71970.1	KRH24392	AT4G39050.1	21798944
AT1G71970.1	KRH29374	AT4G39050.1	21798944
AT1G71970.1	KRH51475	AT4G39050.1	21798944
AT1G71970.1	KRH60786	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34993	Soybean	nucleus, plastid	86.54	88.24
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	46.15	48.24
Bra008000.1-P	Field mustard	nucleus, plastid	41.35	40.76
CDY03667	Canola	nucleus, plastid	41.35	40.76
AT1G22680.1	Thale cress	plastid	35.1	39.46
VIT_18s0075g00270.t01	Wine grape	plastid	34.62	38.92
PGSC0003DMT400036445	Potato	plastid	37.02	38.89
Solyc06g065340.1.1	Tomato	nucleus, plastid	41.83	38.84
CDX82197	Canola	nucleus, plastid	38.46	38.84
CDX96367	Canola	nucleus, plastid	40.87	38.81
CDX72851	Canola	nucleus, plastid	38.94	38.76
Bra016094.1-P	Field mustard	nucleus, plastid	40.38	38.36
CDY36668	Canola	nucleus, plastid	37.5	38.24
PGSC0003DMT400067168	Potato	nucleus, plastid	41.83	38.16
Bra003902.1-P	Field mustard	nucleus, plastid	36.54	37.81
AT1G71970.1	Thale cress	plastid	40.87	37.78
CDX68291	Canola	nucleus, plastid	35.58	36.82
Solyc11g018710.1.1	Tomato	nucleus, plastid	33.65	35.53

Protein Annotations

EMBL:ACUP02012707	EnsemblPlants:KRG91792	EnsemblPlantsGene:GLYMA_20G174600	EntrezGene:100793571	InterPro:DUF688	PANTHER:PTHR33696
PANTHER:PTHR33696:SF1	PFAM:PF05097	ProteinID:KRG91792	ProteinID:KRG91792.1	SEG:seg	UniParc:UPI000233D9B2
UniProt:I1NH96	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:41200802..41201428

Molecular Weight (calculated)

23240.2 Da

IEP (calculated)

10.007

GRAVY (calculated)

-0.614

Length

208 amino acids

Sequence
(BLAST)

001: MDSSSSASVC QHAKVVPKQY DIFHAGRYPS SRRTHSSSSS CSSLSPSSSS FESFFFPEDP LLSPASPLRF SGVPFSWEYL PGIPKKQNSK KKLQESSLKL
101: LPLPPPTTTH SSRKHTHEET RIRKKNSIQS VFQRDPFFAA LVECSKDDSE ETSRNLWNGA KVPRSVSDRF GFISLYASCK RTCAVSESLV YLPSSRRSTC
201: EHVSPRSL

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.