Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03667 | Canola | nucleus, plastid | 85.44 | 83.41 |
| CDX96367 | Canola | nucleus, plastid | 79.13 | 74.43 |
| CDY36668 | Canola | nucleus, plastid | 73.3 | 74.02 |
| CDX68291 | Canola | nucleus, plastid | 71.36 | 73.13 |
| CDX72851 | Canola | nucleus, plastid | 71.36 | 70.33 |
| AT1G71970.1 | Thale cress | plastid | 74.76 | 68.44 |
| KRH34993 | Soybean | nucleus, plastid | 38.84 | 39.22 |
| KRG91792 | Soybean | nucleus, plastid | 38.84 | 38.46 |
| PGSC0003DMT400036445 | Potato | plastid | 33.01 | 34.34 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 33.01 | 34.17 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 32.52 | 34.01 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 29.61 | 32.97 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 33.01 | 30.36 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 32.52 | 29.39 |
Protein Annotations
| EnsemblPlants:CDX82197 | EnsemblPlantsGene:GSBRNA2T00137280001 | InterPro:DUF688 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PFAM:PF05097 |
| ProteinID:CDX82197 | ProteinID:CDX82197.1 | SEG:seg | UniParc:UPI0004EF23A0 | MapMan:35.2 | : |
Description
BnaC02g20930D
Coordinates
chrLK031827:-:1899494..1900114
Molecular Weight (calculated)
22831.0 Da
IEP (calculated)
10.493
GRAVY (calculated)
-0.686
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSKTRLVA RRSDPANFPA KKNISSRRSL SSSSFLFPGD SPLNSLATPL GLIGVPFSWE QLPGKPKDYS HRLNHRRNNE SSVILPLPPH RSITFPVTGK
101: NHKSNCPTKR SSSPVTAMEK DPFAAALLEC SKDDDEDEED VDRRYRGNSG RPSKVLVNNS ISGRFGLVSL YGSCRRTCAV SESIVYLPKP GKAASYDHLL
201: LPRRHR
101: NHKSNCPTKR SSSPVTAMEK DPFAAALLEC SKDDDEDEED VDRRYRGNSG RPSKVLVNNS ISGRFGLVSL YGSCRRTCAV SESIVYLPKP GKAASYDHLL
201: LPRRHR
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.