Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008000.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
| CDX82197 | Canola | nucleus, plastid | 83.41 | 85.44 |
| CDX96367 | Canola | nucleus, plastid | 79.62 | 76.71 |
| CDY36668 | Canola | nucleus, plastid | 72.99 | 75.49 |
| CDX68291 | Canola | nucleus, plastid | 71.56 | 75.12 |
| CDX72851 | Canola | nucleus, plastid | 74.41 | 75.12 |
| AT1G71970.1 | Thale cress | plastid | 75.83 | 71.11 |
| KRG91792 | Soybean | nucleus, plastid | 40.76 | 41.35 |
| KRH34993 | Soybean | nucleus, plastid | 38.86 | 40.2 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 36.49 | 38.69 |
| PGSC0003DMT400036445 | Potato | plastid | 34.6 | 36.87 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 32.7 | 35.03 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 28.91 | 32.97 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 34.12 | 32.14 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 34.12 | 31.58 |
Protein Annotations
| EnsemblPlants:CDY03667 | EnsemblPlantsGene:GSBRNA2T00116453001 | InterPro:DUF688 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PFAM:PF05097 |
| ProteinID:CDY03667 | ProteinID:CDY03667.1 | SEG:seg | UniParc:UPI0002546E19 | MapMan:35.2 | : |
Description
BnaA02g15700D
Coordinates
chrLK031945:-:322730..323365
Molecular Weight (calculated)
23209.3 Da
IEP (calculated)
10.461
GRAVY (calculated)
-0.611
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSKSRLVA RRSDPANFPA KKSISSRRSL SSSSSSFSSC SSSSLVFPGS PLNSPATPFG LIGVPFAWEQ LPGKPKDYSH RLNHRRNNES SVILPLPPHR
101: SITFPVTGKN HKSNYATKKS SSPVTATEKD PFAAALLECS KDDDEDEEDV DRRFRGSSKA LVKNSISDRF GLVSLYGSCR RTCAVSESIV YLPRPGKAAL
201: YDHLLLPRRH R
101: SITFPVTGKN HKSNYATKKS SSPVTATEKD PFAAALLECS KDDDEDEEDV DRRFRGSSKA LVKNSISDRF GLVSLYGSCR RTCAVSESIV YLPRPGKAAL
201: YDHLLLPRRH R
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.