Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g00350.t01 | |
| VIT_14s0066g01280.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71970.1 | VIT_14s0066g01280.t01 | AT3G27960.1 | 21798944 |
| AT1G71970.1 | VIT_03s0038g00350.t01 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34993 | Soybean | nucleus, plastid | 40.54 | 36.76 |
| KRG91792 | Soybean | nucleus, plastid | 38.92 | 34.62 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 36.22 | 33.67 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 37.84 | 31.25 |
| AT1G22680.1 | Thale cress | plastid | 30.27 | 30.27 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 36.76 | 29.82 |
| CDX82197 | Canola | nucleus, plastid | 32.97 | 29.61 |
| CDY36668 | Canola | nucleus, plastid | 32.43 | 29.41 |
| CDY03667 | Canola | nucleus, plastid | 32.97 | 28.91 |
| Bra008000.1-P | Field mustard | nucleus, plastid | 32.97 | 28.91 |
| Bra003902.1-P | Field mustard | nucleus, plastid | 30.27 | 27.86 |
| CDX96367 | Canola | nucleus, plastid | 32.97 | 27.85 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 29.19 | 27.41 |
| Bra016094.1-P | Field mustard | nucleus, plastid | 32.43 | 27.4 |
| CDX68291 | Canola | nucleus, plastid | 29.73 | 27.36 |
| CDX72851 | Canola | nucleus, plastid | 30.81 | 27.27 |
| PGSC0003DMT400036445 | Potato | plastid | 29.19 | 27.27 |
| AT1G71970.1 | Thale cress | plastid | 30.81 | 25.33 |
Protein Annotations
| ArrayExpress:VIT_18s0075g00270 | EMBL:FN594970 | EnsemblPlants:VIT_18s0075g00270.t01 | EnsemblPlantsGene:VIT_18s0075g00270 | EntrezGene:104882698 | PANTHER:PTHR33696 |
| PANTHER:PTHR33696:SF1 | ProteinID:CCB44926 | ProteinID:CCB44926.1 | RefSeq:XP_010665204.1 | SEG:seg | unigene:Vvi.17443 |
| UniParc:UPI000210898D | UniProt:F6GY90 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr18:-:21628504..21629274
Molecular Weight (calculated)
20548.5 Da
IEP (calculated)
10.641
GRAVY (calculated)
-0.535
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSETLNGH ARIVFSRRHS SFPIPKGRSY AQTRFLASPA SSLSSPFSSP GIDSRIPFSW EKIPGVPKKQ APKKEGHSPR FLPLPPPTTP ASSKIRFDHV
101: KMKNPGTKSF QMDPFLVALV ECSKDDDYEE TIVGYVGPKI TRSLSDRFGF VKLSASCKST SCLVSESIVP SPRRSNYNTR NSLFR
101: KMKNPGTKSF QMDPFLVALV ECSKDDDYEE TIVGYVGPKI TRSLSDRFGF VKLSASCKST SCLVSESIVP SPRRSNYNTR NSLFR
001: MDTSPRTRIV PTRRSNSVKF SSTVNISTRR SLSSSSSNSL LFSGNSPATP LHPLGIPFSW EKLPGKPKEF SYHRKNESLS NLLPLPPHWS NHSPNTRCKK
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
Arabidopsis Description
T22J18.15 [Source:UniProtKB/TrEMBL;Acc:O80553]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.