Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68291 | Canola | nucleus, plastid | 86.76 | 88.06 |
| CDX82197 | Canola | nucleus, plastid | 74.02 | 73.3 |
| CDY03667 | Canola | nucleus, plastid | 75.49 | 72.99 |
| CDX96367 | Canola | nucleus, plastid | 77.94 | 72.6 |
| CDX72851 | Canola | nucleus, plastid | 74.02 | 72.25 |
| AT1G71970.1 | Thale cress | plastid | 75.49 | 68.44 |
| KRH34993 | Soybean | nucleus, plastid | 37.75 | 37.75 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 36.76 | 37.69 |
| KRG91792 | Soybean | nucleus, plastid | 38.24 | 37.5 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 29.41 | 32.43 |
| PGSC0003DMT400036445 | Potato | plastid | 30.88 | 31.82 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 33.33 | 30.36 |
| Solyc11g018710.1.1 | Tomato | nucleus, plastid | 28.92 | 29.95 |
| PGSC0003DMT400067168 | Potato | nucleus, plastid | 32.84 | 29.39 |
Protein Annotations
| EnsemblPlants:CDY36668 | EnsemblPlantsGene:GSBRNA2T00062428001 | InterPro:DUF688 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | PFAM:PF05097 |
| ProteinID:CDY36668 | ProteinID:CDY36668.1 | SEG:seg | UniParc:UPI0004EEC1FD | UniProt:A0A078HIM2 | MapMan:35.2 |
Description
BnaCnng07700DBnaCnng07700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIM2]
Coordinates
chrLK032381:-:73575..74227
Molecular Weight (calculated)
22494.5 Da
IEP (calculated)
10.462
GRAVY (calculated)
-0.692
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSRTLIVI RRSDPVKKNI SSRRSLSYSS SFSSSSSSSL VFPSDSPLNS PATPLRLLGV PFSWEQLPGK PKDYSHRLNH HGNRESSLIL PLPPHKSTIF
101: PVTGKNHKSN NSTKKNSFPA TEKDPFAAAL LECSKGDDYD EDYDGNSGGS RKVLAKSSIS KRFGLVNLYG SCRRSCSVTE SIVQLPGPEK SASYDHLLLP
201: RRRR
101: PVTGKNHKSN NSTKKNSFPA TEKDPFAAAL LECSKGDDYD EDYDGNSGGS RKVLAKSSIS KRFGLVNLYG SCRRSCSVTE SIVQLPGPEK SASYDHLLLP
201: RRRR
001: MDTSPRTRIV PTRRSNSVKF SSTVNISTRR SLSSSSSNSL LFSGNSPATP LHPLGIPFSW EKLPGKPKEF SYHRKNESLS NLLPLPPHWS NHSPNTRCKK
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
Arabidopsis Description
T22J18.15 [Source:UniProtKB/TrEMBL;Acc:O80553]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.