Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_03s0038g00350.t01 | |
VIT_14s0066g01280.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G71970.1 | VIT_14s0066g01280.t01 | AT3G27960.1 | 21798944 |
AT1G71970.1 | VIT_03s0038g00350.t01 | AT4G39050.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH34993 | Soybean | nucleus, plastid | 48.74 | 47.55 |
KRG91792 | Soybean | nucleus, plastid | 48.24 | 46.15 |
Solyc06g065340.1.1 | Tomato | nucleus, plastid | 43.72 | 38.84 |
Bra003902.1-P | Field mustard | nucleus, plastid | 39.2 | 38.81 |
CDX68291 | Canola | nucleus, plastid | 38.69 | 38.31 |
PGSC0003DMT400067168 | Potato | nucleus, plastid | 43.72 | 38.16 |
AT1G22680.1 | Thale cress | plastid | 35.18 | 37.84 |
PGSC0003DMT400036445 | Potato | plastid | 37.19 | 37.37 |
CDY36668 | Canola | nucleus, plastid | 37.69 | 36.76 |
Solyc11g018710.1.1 | Tomato | nucleus, plastid | 36.18 | 36.55 |
Bra008000.1-P | Field mustard | nucleus, plastid | 38.69 | 36.49 |
CDY03667 | Canola | nucleus, plastid | 38.69 | 36.49 |
VIT_18s0075g00270.t01 | Wine grape | plastid | 33.67 | 36.22 |
CDX96367 | Canola | nucleus, plastid | 38.69 | 35.16 |
CDX72851 | Canola | nucleus, plastid | 36.68 | 34.93 |
Bra016094.1-P | Field mustard | nucleus, plastid | 38.19 | 34.7 |
AT1G71970.1 | Thale cress | plastid | 37.69 | 33.33 |
CDX82197 | Canola | nucleus, plastid | 34.17 | 33.01 |
Protein Annotations
ArrayExpress:VIT_18s0075g00250 | EMBL:FN594970 | EnsemblPlants:VIT_18s0075g00250.t01 | EnsemblPlantsGene:VIT_18s0075g00250 | EntrezGene:100266309 | EntrezGene:LOC100266309 |
PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | ProteinID:CCB44924 | ProteinID:CCB44924.1 | RefSeq:XP_002263051 | RefSeq:XP_002263051.1 |
SEG:seg | TIGR:TC56845 | unigene:Vvi.7757 | UniParc:UPI0001985C83 | UniProt:F6GY88 | wikigene:100266309 |
wikigene:LOC100266309 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:21610740..21611586
Molecular Weight (calculated)
22225.0 Da
IEP (calculated)
10.354
GRAVY (calculated)
-0.798
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSTKIVPN ERDTKFPATN QLSSRRSQSF SSLSSCSSSL ESSFSGDSPT SPVTPARFSG IPFSWEKIPG IPKKQASRKK ENSPLSLLPL PPSTTPTPSK
101: RFNHQDQETS TIRKKNNISE SFRRDPFFAA FVECCKEDED QETSPNIWKS SKVPRNLSDR LGLINIYTSC KRTCTVSESI TLVPRSARSS YHILNRRSG
101: RFNHQDQETS TIRKKNNISE SFRRDPFFAA FVECCKEDED QETSPNIWKS SKVPRNLSDR LGLINIYTSC KRTCTVSESI TLVPRSARSS YHILNRRSG
001: MDTSPRTRIV PTRRSNSVKF SSTVNISTRR SLSSSSSNSL LFSGNSPATP LHPLGIPFSW EKLPGKPKEF SYHRKNESLS NLLPLPPHWS NHSPNTRCKK
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR
Arabidopsis Description
T22J18.15 [Source:UniProtKB/TrEMBL;Acc:O80553]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.