CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX86457
CDX90305
CDY12116
CDY22394
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	CDX86457	AT3G27960.1	21798944
AT1G71970.1	CDY58518	AT3G27960.1	21798944
AT1G71970.1	CDX72718	AT4G39050.1	21798944
AT1G71970.1	CDX90305	AT4G39050.1	21798944
AT1G71970.1	CDY12116	AT4G39050.1	21798944
AT1G71970.1	CDY22394	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96367	Canola	nucleus, plastid	86.6	82.65
CDY03667	Canola	nucleus, plastid	75.12	74.41
CDY36668	Canola	nucleus, plastid	72.25	74.02
CDX68291	Canola	nucleus, plastid	69.86	72.64
CDX82197	Canola	nucleus, plastid	70.33	71.36
AT1G71970.1	Thale cress	plastid	75.6	70.22
KRH34993	Soybean	nucleus, plastid	38.76	39.71
KRG91792	Soybean	nucleus, plastid	38.76	38.94
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	34.93	36.68
PGSC0003DMT400036445	Potato	plastid	34.45	36.36
Solyc11g018710.1.1	Tomato	nucleus, plastid	33.49	35.53
Solyc06g065340.1.1	Tomato	nucleus, plastid	33.97	31.7
PGSC0003DMT400067168	Potato	nucleus, plastid	33.97	31.14
VIT_18s0075g00270.t01	Wine grape	plastid	27.27	30.81

Protein Annotations

EnsemblPlants:CDX72851	EnsemblPlantsGene:GSBRNA2T00103249001	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1	PFAM:PF05097
ProteinID:CDX72851	ProteinID:CDX72851.1	SEG:seg	UniParc:UPI0004EDF1FD	MapMan:35.2	:

Description

BnaC06g32990D

Coordinates

chrLK031797:+:670000..670839

Molecular Weight (calculated)

23408.3 Da

IEP (calculated)

10.568

GRAVY (calculated)

-0.869

Length

209 amino acids

Sequence
(BLAST)

001: MDSSRTRTLA RRSDPVNFPA KRNTCSRRSL SSSSFSSFSS CSSSSLVFQG DSPLNSPATP LRLLGVPFSW EHLPGKPKDY SHRLNHRLNK ESSVILPLPP
101: HRSTHFPVTG KNKKSNSLSK KNSFPVTEKD PFAAALLECS KDNDDDEDER EEERFRGNSG GSKSSIGDRF GLVSLYGSCR RTCTVTESIV YLPRTRKAAS
201: YDHLPRRRR

Best Arabidopsis Sequence Match ( AT1G71970.1 )
(BLAST)

001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC

Arabidopsis Description

At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.