Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g110190.2.1 | |
| Solyc02g086840.2.1 | |
| Solyc10g054080.1.1 | |
| Solyc11g044880.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036445 | Potato | plastid | 85.79 | 85.35 |
| Solyc06g065340.1.1 | Tomato | nucleus, plastid | 44.16 | 38.84 |
| VIT_18s0075g00250.t01 | Wine grape | nucleus, plastid | 36.55 | 36.18 |
| AT1G22680.1 | Thale cress | plastid | 32.49 | 34.59 |
| KRH34993 | Soybean | nucleus, plastid | 35.03 | 33.82 |
| KRG91792 | Soybean | nucleus, plastid | 35.53 | 33.65 |
| CDX72851 | Canola | nucleus, plastid | 35.53 | 33.49 |
| Bra008000.1-P | Field mustard | nucleus, plastid | 35.03 | 32.7 |
| CDY03667 | Canola | nucleus, plastid | 35.03 | 32.7 |
| CDX82197 | Canola | nucleus, plastid | 34.01 | 32.52 |
| Bra016094.1-P | Field mustard | nucleus, plastid | 35.03 | 31.51 |
| CDX96367 | Canola | nucleus, plastid | 35.03 | 31.51 |
| AT1G71970.1 | Thale cress | plastid | 34.52 | 30.22 |
| VIT_18s0075g00270.t01 | Wine grape | plastid | 27.41 | 29.19 |
| CDY36668 | Canola | nucleus, plastid | 29.95 | 28.92 |
| CDX68291 | Canola | nucleus, plastid | 29.44 | 28.86 |
| Bra003902.1-P | Field mustard | nucleus, plastid | 29.44 | 28.86 |
Protein Annotations
| EnsemblPlants:Solyc11g018710.1.1 | EnsemblPlantsGene:Solyc11g018710.1 | PANTHER:PTHR33696 | PANTHER:PTHR33696:SF1 | SEG:seg | UniParc:UPI000276AA75 |
| UniProt:K4D6S5 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:9242051..9242644
Molecular Weight (calculated)
22288.2 Da
IEP (calculated)
10.533
GRAVY (calculated)
-0.812
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTNTTPR YGQKATTFST PIFTLSSTMP YHSSFGSLSL HDQKGVPFSW EHIPGIPKQQ SSRKNSSSLS QLLPLPPPSR KPPNSSKKIQ RLHDEFSPRK
101: ISSTTSEGFK KDPFFAAFVE CSKDHQEHHE NFSDMWKNTT TSSSKVMNSS ARTSLSDKFG FMNMYASCKR TCTVSESVVY LPRSRNYDLL RTRRTSQ
101: ISSTTSEGFK KDPFFAAFVE CSKDHQEHHE NFSDMWKNTT TSSSKVMNSS ARTSLSDKFG FMNMYASCKR TCTVSESVVY LPRSRNYDLL RTRRTSQ
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
Arabidopsis Description
At1g71970/F17M19_12 [Source:UniProtKB/TrEMBL;Acc:Q9C8W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.