Factsheet for Solyc10g054080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082970.1.1
Solyc02g092380.2.1
Solyc03g031460.1.1
Solyc03g095610.2.1
Solyc03g111100.1.1
Solyc03g112660.2.1
Solyc03g117290.1.1
Solyc03g120440.1.1
Solyc05g053730.2.1
Solyc06g008600.2.1
Solyc06g068330.1.1
Solyc06g084040.2.1
Solyc07g005690.2.1
Solyc07g052050.1.1
Solyc07g052190.1.1
Solyc07g054690.1.1
Solyc07g063190.2.1
Solyc09g008040.2.1
Solyc09g065280.2.1
Solyc09g065990.2.1
Solyc10g006970.2.1
Solyc10g079430.1.1
Solyc11g066420.1.1
Solyc12g009970.1.1
Solyc12g013810.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39050.1	Solyc07g052050.1.1	AT1G03140.1	21798944
AT4G39050.1	Solyc07g052190.1.1	AT1G03140.1	21798944
AT4G39050.1	Solyc09g065280.2.1	AT1G03140.1	21798944
AT4G39050.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT4G39050.1	Solyc03g031460.1.1	AT1G55890.1	21798944
AT4G39050.1	Solyc02g082970.1.1	AT2G17670.1	21798944
AT4G39050.1	Solyc06g008600.2.1	AT2G30580.1	21798944
AT4G39050.1	Solyc06g084040.2.1	AT2G30580.1	21798944
AT4G39050.1	Solyc09g065990.2.1	AT2G30580.1	21798944
AT4G39050.1	Solyc09g008040.2.1	AT2G36990.1	21798944
AT4G39050.1	Solyc07g063190.2.1	AT3G15360.1	21798944
AT4G39050.1	Solyc10g006970.2.1	AT3G15360.1	21798944
AT4G39050.1	Solyc12g013810.1.1	AT3G15360.1	21798944
AT4G39050.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT4G39050.1	Solyc03g112660.2.1	AT4G24680.1	21798944
AT4G39050.1	Solyc07g054690.1.1	AT4G28230.1	21798944
AT4G39050.1	Solyc03g095610.2.1	AT5G05190.1	21798944
AT4G39050.1	Solyc03g117290.1.1	AT5G11090.1	21798944
AT4G39050.1	Solyc06g068330.1.1	AT5G11090.1	21798944
AT4G39050.1	Solyc11g066420.1.1	AT5G22890.1	21798944
AT4G39050.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT4G39050.1	Solyc07g005690.2.1	AT5G57910.1	21798944
AT4G39050.1	Solyc12g009970.1.1	AT5G57910.1	21798944
AT4G39050.1	Solyc03g111100.1.1	AT5G63350.1	21798944
AT4G39050.1	Solyc02g092380.2.1	AT5G67530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008772	Potato	cytosol	43.0	95.62
Solyc11g044880.1.1	Tomato	plastid	81.69	81.54
KRH60786	Soybean	plastid	74.65	74.3
VIT_03s0038g00350.t01	Wine grape	plastid	76.43	73.93
KRH51475	Soybean	plastid	74.08	73.74
Solyc01g110190.2.1	Tomato	plastid	72.49	72.22
CDX72718	Canola	plastid	68.92	72.17
CDX90305	Canola	plastid	69.86	72.02
CDY12116	Canola	plastid	69.86	72.02
KRH29374	Soybean	plastid	72.58	71.91
CDY22394	Canola	plastid	69.86	71.75
AT4G39050.1	Thale cress	plastid	70.99	71.66
Bra010714.1-P	Field mustard	plastid	70.52	71.46
KRH24392	Soybean	plastid	71.55	69.97
AT2G21380.2	Thale cress	plastid	68.73	69.19
Bra031184.1-P	Field mustard	plastid	69.48	69.03
CDX82022	Canola	plastid	69.39	69.0
KXG38192	Sorghum	plastid	64.98	65.97
Os10t0512800-01	Rice	plastid	64.98	65.34
TraesCS1B01G202600.1	Wheat	plastid	63.19	64.65
TraesCS1A01G177600.1	Wheat	plastid	63.19	64.65
TraesCS1D01G176100.1	Wheat	plastid	63.1	64.55
GSMUA_Achr11P...	Banana	plastid	22.54	64.0
Zm00001d032464_P008	Maize	plastid	64.04	63.56
Zm00001d013859_P002	Maize	plastid	62.91	62.44
HORVU1Hr1G047110.10	Barley	plastid	60.28	61.44
Bra033597.1-P	Field mustard	cytosol	70.23	61.36
Solyc03g053080.1.1	Tomato	cytosol, plastid	31.08	54.98
Solyc06g060140.2.1	Tomato	plastid	48.73	45.61
Solyc04g077540.2.1	Tomato	cytosol	18.59	23.91
Solyc01g057320.1.1	Tomato	cytosol, plastid	15.49	22.54
Solyc07g042560.2.1	Tomato	plastid	18.12	20.1
Solyc03g119220.2.1	Tomato	nucleus	17.93	19.85
Solyc10g083310.1.1	Tomato	cytosol	17.93	18.91
Solyc01g110380.2.1	Tomato	cytosol	16.34	18.87
Solyc04g040110.2.1	Tomato	cytosol	22.25	18.68
Solyc09g010060.2.1	Tomato	cytosol	17.65	18.67
Solyc04g081060.2.1	Tomato	nucleus	16.15	18.57
Solyc04g078610.2.1	Tomato	cytosol	17.93	18.53
Solyc10g086340.1.1	Tomato	cytosol	17.75	18.1
Solyc04g076310.2.1	Tomato	cytosol, nucleus	17.0	18.1
Solyc02g084390.2.1	Tomato	cytosol	17.18	17.96
Solyc02g062330.1.1	Tomato	extracellular	16.71	17.43
Solyc06g075580.2.1	Tomato	cytosol, plastid	17.09	17.43
Solyc11g072820.1.1	Tomato	cytosol, plastid	16.81	17.02
Solyc09g007030.2.1	Tomato	cytosol, plastid	16.53	16.67
Solyc11g071730.1.1	Tomato	cytosol	20.09	16.22
Solyc07g065210.2.1	Tomato	plastid	17.28	15.45
Solyc12g098630.1.1	Tomato	cytosol, plastid	18.5	15.02
Solyc09g097860.2.1	Tomato	cytosol	18.59	14.48
Solyc01g108670.2.1	Tomato	cytosol	21.69	7.87

Protein Annotations

MapMan:20.1.3.6	Gene3D:3.30.40.10	Gene3D:3.40.850.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003774	GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005871	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	InterPro:IPR001752
InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036961	UniProt:K4D106	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS
InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00225	PFAM:PF13920	PRINTS:PR00380
ScanProsite:PS00411	PFscan:PS50067	PFscan:PS50089	PANTHER:PTHR24115	PANTHER:PTHR24115:SF497	SMART:SM00129
SUPFAM:SSF52540	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc10g054080.1	EnsemblPlants:Solyc10g054080.1.1	UniParc:UPI000276A9DF	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:54557659..54568271

Molecular Weight (calculated)

119061.0 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.655

Length

1065 amino acids

Sequence
(BLAST)

0001: MASSSSSKGR SSSPSHYRKP STPYSSSSSS SSSIMNGRML PRSYSSSTTS FYGSGNSYNS RSMTPSHSRS DSVYSQGYEN RTPVSYPSEE ELIDEPADES
0101: RSGDSISVTV RFRPMSEREY HKGDEIAWYA DGGKTVRNEY NPATAYAFDR VFGPQTNTQD VYEVAAQPVV KAAMEGIHGT VFAYGVTSSG KTHTMHGDHN
0201: TPGIIPLAIK DVFSIIQDTP GREFLLRVSY IEIYNEVIND LLDPTGQNLR VREDAQGTYV EGIKEEVVLS PGHALSFIAA GEEHRHVGSN NFNLFSSRSH
0301: TIFSLMIESS AHGDEYDGVI FSQLNLIDLA GSESSKTETT GLRRKEGSYI NKSLLTLGTV IGKLSEGKAC HVPYRDSKLT RLLQSSLSGH GHVSLICTVT
0401: PASSNMEETH NTLKFASRAK RVEIYASRNQ IIDEKSLIKK YQREISCLKQ ELDQLRRGML VGVNHEEVLN LRQQLEEGQV KMQSRLEEEE EEKAALLSRI
0501: QRLTKLILVS SKNSTPGYLG DVASQQRSLS ASEDDKMDSS VLADSENQKD PSPDSSDLKH QRSSSKWNDD ISQAGSTIEG ISMSDEMDLL AEQVKMLSGE
0601: IAFSSSTLKR LMEQSVNDPE SSRNQIENLE REIQEKRNQM RMLEQRIVEN GEASVSKASL VEMQQTLMKL MTQYSQTGFE LEIKSADNRI LQEELQNKCS
0701: ENKELQEKIY HLEQQLLSVK AEKSFPSVEQ RVSAEYVDEL RKKIQSQDIE NGKLRLEHVQ IVEENSGLHV QNQKLSEEAL YAKELASAAA VELKNLAGEV
0801: TKLSLQNGKL EKELLAARDM LNSRSSIALT GNVGNRKHGE NLRTGRRGRI TGRGSEIPGA IHDDFNTWDL DPEDLKMELQ ARKQREAALE AVLSEKEVVE
0901: DEYRKKVEEG KKREAALEND LANMWVLVAQ LKKEAGSRQD SKLAAERQNV EDRLNDVKIN DINQKEPNLA DSLSVNHTTD IAEGPKEEPL VARLKARMQE
1001: MKEKEHRHLG NGDANSHVCK VCFESPTTAM LLPCRHFCLC KSCSLACFEC PICRTKIVDR IFAFT

Best Arabidopsis Sequence Match ( AT4G39050.1 )
(BLAST)

0001: MASSSSRTRS SRPPSPASST SSSHLSNRLI PRSNSTSASS LITSAAGIAS RSMTPSRTFS DSGLIGSGSF GIGSPVPYPS EELLGDPMDD TISSERDSIS
0101: VTVRFRPLSD REYQRGDEVA WYPDGDTLVR HEYNPLTAYA FDKVFGPQAT TIDVYDVAAR PVVKAAMEGV NGTVFAYGVT SSGKTHTMHG DQESPGIIPL
0201: AIKDVFSIIQ DTPGREFLLR VSYLEIYNEV INDLLDPTGQ NLRVREDSQG TYVEGIKEEV VLSPGHALSF IAAGEEHRHV GSNNFNLLSS RSHTIFTLMV
0301: ESSATGDEYD GVIFSQLNLI DLAGSESSKT ETTGLRRKEG SYINKSLLTL GTVIGKLSEG KATHIPYRDS KLTRLLQSSL SGHGHVSLIC TITPASSSSE
0401: ETHNTLKFAS RAKSIEIYAS RNQIIDEKSL IKKYQREIST LKLELDQLRR GMLVGVSHEE LMSLKQQLEE GQVKMQSRLE EEEEAKAALM SRIQKLTKLI
0501: LVSTKNSIPG YSGDIPTHQR SLSAGKDDKF DSLLLESDNL GSPSSTLALL SEGSLGFNHR RSSSKLNDEN SPGAEFTQGV MTPDEIDLLV EQVKMLAGEI
0601: AFSTSTLKRL VDQSVNDPEN SQTQIQNLER EIHEKQRQMR GLEQLIIESG EASIANASLV EMQQKVMSLM TQCNEKSFEL EIKSADNCIL QEQLQEKCTE
0701: NKELHEKVNL LEQRLNAVSS EKSSPSCSNK AVSGEYADEL KKKIQSQEIE NEELKLEHVQ IVEENSGLRV QNQKLAEEAS YAKELASAAA VELKNLASEV
0801: TKLSLQNTKL EKELAAARDL AQTRNPMNGV NRKYNDGARS GRKGRISSSR SSGDEFDAWN LDPEDLKMEL QVRKQREVAL ESALAEKEFI EDEYRKKAEE
0901: AKRREEALEN DLANMWVLVA KLKKDNGALP EPNGTDPGRE LEKSQSHAVL KERQVSSAPR QPEVVVVAKT EETPKEEPLV ARLKARMQEM KEKEMKSQAN
1001: GDANSHICKV CFESPTAAIL LPCRHFCLCK SCSLACSECP ICRTKISDRL FAFPS

Arabidopsis Description

KIN7DKinesin-like protein KIN-7D, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W5R5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.