Factsheet for Solyc02g082970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1
Solyc08g078700.2.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT2G17670.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT2G17670.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090670	Potato	plastid	96.38	96.79
VIT_00s1360g00010.t01	Wine grape	cytosol	29.64	72.4
KRH48741	Soybean	cytosol	45.63	67.72
KRH66617	Soybean	plastid	54.37	60.28
VIT_00s0918g00010.t01	Wine grape	plastid	31.56	56.7
AT2G17670.1	Thale cress	plastid	55.65	56.37
CDY26819	Canola	plastid	53.52	55.16
CDY30354	Canola	plastid	52.67	54.17
Bra037262.1-P	Field mustard	plastid	53.09	54.01
GSMUA_Achr1P18100_001	Banana	plastid	48.83	51.58
Os02t0119700-01	Rice	mitochondrion	30.7	39.24
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	31.56	38.85
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	31.56	38.85
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	30.92	38.16
Zm00001d054009_P001	Maize	mitochondrion	29.21	36.44
HORVU6Hr1G013000.2	Barley	plastid	29.21	34.68
OQU84226	Sorghum	cytosol, plastid	30.28	31.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BAG5
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:Solyc02g082970.1	EnsemblPlants:Solyc02g082970.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027682CE	SEG:seg

Description

No Description!

Coordinates

chr2:+:46568787..46570196

Molecular Weight (calculated)

52174.9 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.323

Length

469 amino acids

Sequence
(BLAST)

001: MGKLPPSLRS ANFAVNTLIK TPSPSPSPSP PPTSKPHYYP KKSQSPKKKP TSITEPQLPS SILAFDSTSL SDAKTLFNSL ISSTRNPSTD NKFYNAVLQS
101: FSSNSTLQDS IFFLNHMIKV HPPFSPDRFT YHVLLVQSCK SVDLSLSPVH QVLNLMTTNG FPPNKVSTDI AVRTLCSSGH EEQAIELVKE LSSKDSPPDT
201: YTYNFIIRHL CKNRPLSTMN NFIKEMREGF DIKPDLVTYT IMIDNVCNSK NLREATRLLG VLSEEGYKPD CYVYNTIMKG YCMLSQGGEV LGVYKKMQEE
301: GVKPDLVTYN TLIYGLSKSG RVKDAKKFLN VMMEEGHVPD AVTYTSLMNG MCREADPLGA VALLEKMEAR GCAPNSCTYN TLLHGLCKGR LLDKGMKLYD
401: VMKQNGTKLE TGSYGTFLRA LCRNGRVADA YEVFDYAIES KSLTDVAAYT TLESTLKWLK KAREQGLVI

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.