Factsheet for Os02t0119700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os02t0758000-01
Os04t0550400-01
Os06t0219500-00
Os06t0679100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	Os04t0550400-01	AT2G44950.1	21798944
AT2G17670.1	Os02t0656300-01	AT3G48150.1	21798944
AT2G17670.1	Os06t0679100-00	AT3G48150.1	21798944
AT2G17670.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G17670.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	71.93	69.29
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	71.12	68.68
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	71.12	68.5
HORVU6Hr1G013000.2	Barley	plastid	68.66	63.8
Zm00001d054009_P001	Maize	mitochondrion	64.03	62.5
VIT_00s1360g00010.t01	Wine grape	cytosol	30.52	58.33
OQU84226	Sorghum	cytosol, plastid	65.12	52.64
KRH48741	Soybean	cytosol	36.78	42.72
GSMUA_Achr1P18100_001	Banana	plastid	47.96	39.64
KRH66617	Soybean	plastid	39.51	34.28
CDY26819	Canola	plastid	39.78	32.09
CDY30354	Canola	plastid	39.51	31.8
Bra037262.1-P	Field mustard	plastid	39.78	31.67
Solyc02g082970.1.1	Tomato	plastid	39.24	30.7
AT2G17670.1	Thale cress	plastid	38.15	30.24
PGSC0003DMT400090670	Potato	plastid	38.15	29.98
VIT_00s0918g00010.t01	Wine grape	plastid	8.45	11.88
KRH48742	Soybean	cytosol, mitochondrion, plastid	3.54	9.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4328106	EMBL:AK108777	ProteinID:BAD07623.1	ProteinID:BAD08127.1
ProteinID:BAF07617.1	ProteinID:BAS76692.1	ProteinID:EAZ21523.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os02g0119700	EnsemblPlants:Os02t0119700-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat	UniProt:Q6YUT0	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000023675B	RefSeq:XP_015625221.1	RefSeq:XP_015625222.1	RefSeq:XP_015625223.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os02t0119700-01)

Coordinates

chr2:-:1038399..1039710

Molecular Weight (calculated)

39106.8 Da

IEP (calculated)

9.965

GRAVY (calculated)

-0.094

Length

367 amino acids

Sequence
(BLAST)

001: MGKVPHAMRA AKLPLAVLAK PTHASASQPP APPRPSNPRH RKTPAKASKT PAPATAAAPP PVEKRPIKTA SDLAAAIRAA ADADVDAAVD LARSAARTIP
101: LPPHSLSLLL RRLARHRSVA AARGLLAELH PSPASPPPRP ALLALSDAVC RRGEPREIAQ LLPVLADHGV KADAPVYNAL MKAHCAASDP AGVLGVLRRM
201: KDDGVEPDLV TYNTLVFGLA RAGMVTKART YLDAMAAAGH FPDVITYTSL MNGMCVKGDA MGALALLEEM EAKGCEPNER TYNTLLMGLC KNKKLDKAVD
301: VYKSMVGAAM KLEAPAYATF VRALCRAGRI PDAYEVFDYG IESKSFAEVT LYTELENSLK WLHRMKS

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.