Factsheet for GSMUA_Achr1P18100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P01610_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT2G17670.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT2G17670.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944
AT2G17670.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT2G17670.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1360g00010.t01	Wine grape	cytosol	27.7	64.06
KRH48741	Soybean	cytosol	41.67	58.54
KRH66617	Soybean	plastid	49.55	52.01
PGSC0003DMT400090670	Potato	plastid	51.8	49.25
Solyc02g082970.1.1	Tomato	plastid	51.58	48.83
Os02t0119700-01	Rice	mitochondrion	39.64	47.96
AT2G17670.1	Thale cress	plastid	47.75	45.79
CDY26819	Canola	plastid	45.27	44.18
CDY30354	Canola	plastid	44.59	43.42
Bra037262.1-P	Field mustard	plastid	45.05	43.38
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	36.49	42.63
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	36.49	42.52
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	35.81	41.73
Zm00001d054009_P001	Maize	mitochondrion	34.68	40.96
HORVU6Hr1G013000.2	Barley	plastid	35.36	39.75
OQU84226	Sorghum	cytosol, plastid	36.71	35.9
VIT_00s0918g00010.t01	Wine grape	plastid	20.5	34.87
KRH48742	Soybean	cytosol, mitochondrion, plastid	10.14	32.85

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18100_001	EnsemblPlants:GSMUA_Achr1T18100_001	EnsemblPlantsGene:GSMUA_Achr1G18100_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF893	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000296E0CF	UniProt:M0S0W8	MapMan:35.1	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g17670 [Source:GMGC_GENE;Acc:GSMUA_Achr1G18100_001]

Coordinates

chr1:-:13549949..13551343

Molecular Weight (calculated)

48556.0 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.132

Length

444 amino acids

Sequence
(BLAST)

001: MGKLPPSLRS AKLPLPFHKP PPSPSPPSPL KKPKKPSKTP RGTLNPSPPP PQQHVFRSPL LSDAISTFDA LAASSPSSLD PTSLLQSFCN AGASPADALS
101: FHRHISPSLA PGRAAFHVLL GHSCLHHSAP DPASVLDLMS DNGSPPDAAS ADLAVRALCS ADRLDDACVL LRDRLASAAD RFTYNFLVRR FARFRPISTV
201: YALIKELRGV GLQPDVVTYT NLIDAVCRGR NLREATRLLG MLADAGFKPD CYVYNVIMKG YCMVDQYGEV MEVYNRMKDE GIEPDLVTYN TLVYGLSKAG
301: MLTQAKKFLN VMADMGHFPD VVTYTSLMGG MCRKGDALGA LKLLEEMEEK GCNPNECTYN TLLMGLCKAK CLDKGMQLYQ EMIAKAMKLE NATYATFVRA
401: LCRANKIAEA YEVFDYAIDS KSLTDVTAYM ALENSLKWLN KAKV

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.