Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G070600.1 | Wheat | cytosol, mitochondrion, plastid | 96.85 | 96.85 |
| TraesCS6B01G097600.1 | Wheat | cytosol, mitochondrion, plastid | 95.54 | 95.79 |
| HORVU6Hr1G013000.2 | Barley | plastid | 79.79 | 76.96 |
| Os02t0119700-01 | Rice | mitochondrion | 69.29 | 71.93 |
| Zm00001d054009_P001 | Maize | mitochondrion | 59.32 | 60.11 |
| VIT_00s1360g00010.t01 | Wine grape | cytosol | 29.4 | 58.33 |
| OQU84226 | Sorghum | cytosol, plastid | 61.94 | 51.98 |
| KRH48741 | Soybean | cytosol | 34.38 | 41.46 |
| GSMUA_Achr1P18100_001 | Banana | plastid | 42.52 | 36.49 |
| KRH66617 | Soybean | plastid | 37.53 | 33.81 |
| Solyc02g082970.1.1 | Tomato | plastid | 38.85 | 31.56 |
| CDY26819 | Canola | plastid | 37.53 | 31.43 |
| CDY30354 | Canola | plastid | 37.01 | 30.92 |
| PGSC0003DMT400090670 | Potato | plastid | 37.8 | 30.84 |
| Bra037262.1-P | Field mustard | plastid | 37.01 | 30.59 |
| AT2G17670.1 | Thale cress | plastid | 36.22 | 29.81 |
| KRH48742 | Soybean | cytosol, mitochondrion, plastid | 3.94 | 10.95 |
| VIT_00s0918g00010.t01 | Wine grape | plastid | 7.35 | 10.73 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G072600.1 | EnsemblPlantsGene:TraesCS6A01G072600 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF893 |
| PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:39507807..39509039
Molecular Weight (calculated)
40573.2 Da
IEP (calculated)
9.424
GRAVY (calculated)
-0.196
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVPAQAMR AAKVPRHALV PKPSAASTPP PPPPPPQGPR PADGKPPHGK PPRRTPRGPS EHAGALALPD RPAPPAEKRP ITTPAELSAA IRAAVDADVD
101: AAASLALKAA PTIPLPAQSL ALILRRLAAH RSVAAARDLL AELPYSADNP APRPALLALA DACCRRGDPR EIGQLLPVLA DHGVRADAHV YNALMKGHCA
201: DSDTAGLLGV LRRMKDDGVD PDLVTYNTLV YGLARAGLVA KARTYLDAMA AQGLFPDVIT YTSLMNGMCV KGDALGALKL LEEMQANGCE PNDRTYNTLL
301: MGLCRNRKLD KAFEVYKSIV GAGMKLEPPA YATFIRALCR AGRVPDAYEV FDYGIESKSF AQATAYSELE SSLKWLRKMK E
101: AAASLALKAA PTIPLPAQSL ALILRRLAAH RSVAAARDLL AELPYSADNP APRPALLALA DACCRRGDPR EIGQLLPVLA DHGVRADAHV YNALMKGHCA
201: DSDTAGLLGV LRRMKDDGVD PDLVTYNTLV YGLARAGLVA KARTYLDAMA AQGLFPDVIT YTSLMNGMCV KGDALGALKL LEEMQANGCE PNDRTYNTLL
301: MGLCRNRKLD KAFEVYKSIV GAGMKLEPPA YATFIRALCR AGRVPDAYEV FDYGIESKSF AQATAYSELE SSLKWLRKMK E
001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.