Factsheet for PGSC0003DMT400090670

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT2G17670.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082970.1.1	Tomato	plastid	96.79	96.38
VIT_00s1360g00010.t01	Wine grape	cytosol	29.55	71.88
KRH48741	Soybean	cytosol	45.82	67.72
KRH66617	Soybean	plastid	54.39	60.05
AT2G17670.1	Thale cress	plastid	55.46	55.94
VIT_00s0918g00010.t01	Wine grape	plastid	31.26	55.94
CDY26819	Canola	plastid	53.32	54.73
CDY30354	Canola	plastid	52.46	53.73
Bra037262.1-P	Field mustard	plastid	52.89	53.58
GSMUA_Achr1P18100_001	Banana	plastid	49.25	51.8
Os02t0119700-01	Rice	mitochondrion	29.98	38.15
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	30.84	37.8
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	30.84	37.8
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	30.19	37.11
Zm00001d054009_P001	Maize	mitochondrion	28.91	35.9
HORVU6Hr1G013000.2	Barley	plastid	28.69	33.92
OQU84226	Sorghum	cytosol, plastid	29.76	30.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400090670	EnsemblPlantsGene:PGSC0003DMG400040241	EntrezGene:102587006	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF893	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400040241	RefSeq:XP_006340813.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002954A88	UniProt:M1DKX2	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040241]

Coordinates

chr2:+:38770790..38772193

Molecular Weight (calculated)

52018.6 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.326

Length

467 amino acids

Sequence
(BLAST)

001: MGKLPPSLRS ANFAVNTLIK TPSPSPSPPP TSKPHYYPKK SQTPKKKLTS NTEPQLPSSI VAFDSTSLSD AKTLFNSLIS NSRNPTSDNK FYNAVLQSFS
101: SNSTLQDSIF FLNHVIKVHP PFSPDRFTYH VLLIQSCKSV DLSLSPVHQV LNLMTTNGFP PNKVSTDIAV RTLCSSGHEE QAIELVKELS SKDSPPDTYT
201: YNFIVRHLCK NRPLSTMNNF IKEMREGFDI KPDLVTYTIM IDNVCNSKNL REATRLLGVL SEEGYKPDCY VYNTIMKGYC MLSQGGEVLG VYKKMQEEGV
301: KPDLVTYNTL IYGLSKSGRV KDAKKFLNVM MEEGHVPDAV TYTSLMNGMC READPLGAVA LLEKMEARGC APNSCTYNTL LHGLCKGRLL DKGMKLYDVM
401: KQNSTKLETG SYGTFLRALC RNGRVAEAYD VFDYAIESKS LTDVAAYTTL ESTLKWLKKA REQGLVI

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.