CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
EER89430
EER89431
EES07517
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	EER88892	AT2G44950.1	21798944
AT2G17670.1	EES07517	AT3G48150.1	21798944
AT2G17670.1	EER89430	AT4G25200.1	21798944
AT2G17670.1	EER89431	AT4G25200.1	21798944
AT2G17670.1	KXG19616	AT4G25200.1	21798944
AT2G17670.1	OQU75612	AT4G25200.1	21798944
AT2G17670.1	OQU75930	AT4G25200.1	21798944
AT2G17670.1	OQU76071	AT4G25200.1	21798944
AT2G17670.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054009_P001	Maize	mitochondrion	62.11	75.0
Os02t0119700-01	Rice	mitochondrion	52.64	65.12
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	52.86	63.16
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	51.98	61.94
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	51.98	61.94
HORVU6Hr1G013000.2	Barley	plastid	50.66	58.23
VIT_00s1360g00010.t01	Wine grape	cytosol	24.23	57.29
KRH48741	Soybean	cytosol	28.63	41.14
GSMUA_Achr1P18100_001	Banana	plastid	35.9	36.71
KRH66617	Soybean	plastid	31.5	33.81
CDY26819	Canola	plastid	31.5	31.43
Bra037262.1-P	Field mustard	plastid	31.28	30.8
CDY30354	Canola	plastid	30.62	30.48
AT2G17670.1	Thale cress	plastid	31.06	30.45
Solyc02g082970.1.1	Tomato	plastid	31.28	30.28
PGSC0003DMT400090670	Potato	plastid	30.62	29.76
VIT_00s0918g00010.t01	Wine grape	plastid	8.81	15.33
KRH48742	Soybean	cytosol, mitochondrion, plastid	3.08	10.22

Protein Annotations

EnsemblPlants:OQU84226	EnsemblPlantsGene:SORBI_3004G016300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893
PFAM:PF13041	PFscan:PS51375	ProteinID:OQU84226	ProteinID:OQU84226.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B4254F2	UniProt:A0A1Z5RLI0	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1301294..1302672

Molecular Weight (calculated)

48423.6 Da

IEP (calculated)

10.308

GRAVY (calculated)

-0.288

Length

454 amino acids

Sequence
(BLAST)

001: MGRNYIATGA AQHPRPPSHA AAPAAAPLLF AAAQTQPASP SRPHRRRCPA RPPEGIKRTR RMGKARHAAK LPLALIPKPK PRPHAASPST PAPPPASPPP
101: ARPPANPAKP RKKPHVTSKR STALPPAAAA AADTDDAPAV QEERKPIRTP ADLASAIRAT ADADIDAATA LALSAPPDVP LPTHSLALLL RRLATTRSVF
201: AARGLLDKLH PAGEDDGAPR PNPAPRGALL ALADVVCHRG GLREISSILP VLRDHGVRAD AHLYNALMKA HVAADDPGAV LRVFRQMKDD GVDPDLVTYN
301: TLIFGLARAG MVRKARAFIH AMAAEGHLPD VITYTSLMNG MCVQGDALGA LKLLEEMEAE GCQPNERTYN TLLMGLCKNK KLDKAVEVYK SMVGAGMKLD
401: SPAYASYVRA LCRSGSVADA YEVFDYAIQT KSFTEVTAYS ELENSLKWLR KMKP

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.