CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH24006
KRH27971
KRH29310
KRH30315
KRH39841
KRH75261
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	KRH30315	AT2G44950.1	21798944
AT2G17670.1	KRH75261	AT2G44950.1	21798944
AT2G17670.1	KRH24006	AT3G48150.1	21798944
AT2G17670.1	KRH27971	AT3G48150.1	21798944
AT2G17670.1	KRH29310	AT3G48150.1	21798944
AT2G17670.1	KRH77487	AT3G48150.1	21798944
AT2G17670.1	KRH23958	AT4G25200.1	21798944
AT2G17670.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1360g00010.t01	Wine grape	cytosol	46.52	76.56
KRH66617	Soybean	plastid	87.03	65.01
PGSC0003DMT400090670	Potato	plastid	67.72	45.82
Solyc02g082970.1.1	Tomato	plastid	67.72	45.63
AT2G17670.1	Thale cress	plastid	66.77	45.57
CDY30354	Canola	plastid	63.92	44.3
CDY26819	Canola	plastid	63.29	43.96
Bra037262.1-P	Field mustard	plastid	63.29	43.38
GSMUA_Achr1P18100_001	Banana	plastid	58.54	41.67
Os02t0119700-01	Rice	mitochondrion	42.72	36.78
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	41.46	34.47
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	41.46	34.38
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	41.14	34.12
Zm00001d054009_P001	Maize	mitochondrion	40.51	34.04
HORVU6Hr1G013000.2	Barley	plastid	42.09	33.67
OQU84226	Sorghum	cytosol, plastid	41.14	28.63
VIT_00s0918g00010.t01	Wine grape	plastid	19.94	24.14
KRH48742	Soybean	cytosol, mitochondrion, plastid	2.22	5.11

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02004270	EnsemblPlantsGene:GLYMA_07G109000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K7L1B8	EnsemblPlants:KRH48741	ProteinID:KRH48741	ProteinID:KRH48741.1	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023C7F3B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:10737537..10740375

Molecular Weight (calculated)

35026.5 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.011

Length

316 amino acids

Sequence
(BLAST)

001: MLAAGITPDT ATADVAVRSL CSAGRLDHAV ELIKEFASKH CPPDTYTFNF LVKHLCKSST ITTVYAFIDE MREKFDVKPD LVTYTILIDN VCNGKNLNLR
101: EAMRLVSVLH EEGFKLDCFV YNTIMKGYCV LSRGSEAIEV YNKMKEEGVE PDLVTYNTLI FGLSKSGRVT EARKLLRVMA EKGYFPDEVT YTSLMNGLCR
201: KGDALGALAL LGEMEAKGCS PNACTYNTLL HGLCKARLVE KAVKFYQVIR AGGLKLDTAS YGTFVRALCR DGRIAEAYEV FDYAVESKSL TDVAAYSTLE
301: STLKWLRKAK EQGLAI

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.