Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75261 | Soybean | nucleus | 93.74 | 93.64 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 63.94 | 64.01 |
| Solyc11g013370.1.1 | Tomato | nucleus | 55.97 | 58.09 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 23.32 | 53.66 |
| AT2G44950.1 | Thale cress | nucleus | 50.17 | 50.23 |
| CDX74700 | Canola | nucleus | 50.17 | 50.06 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 49.94 | 49.83 |
| CDY18962 | Canola | nucleus | 49.37 | 49.71 |
| Bra040332.1-P | Field mustard | nucleus | 49.49 | 49.49 |
| CDY37020 | Canola | nucleus | 49.15 | 49.26 |
| CDY27400 | Canola | nucleus | 48.81 | 49.14 |
| Bra004879.1-P | Field mustard | nucleus | 49.83 | 48.45 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 44.94 | 45.4 |
| Os04t0550400-01 | Rice | nucleus | 45.62 | 45.36 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 44.37 | 44.83 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 44.25 | 44.71 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 44.37 | 44.67 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 25.6 | 44.47 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 44.25 | 44.41 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 44.14 | 44.29 |
| EER88892 | Sorghum | cytosol | 42.78 | 44.18 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 44.03 | 44.18 |
| Zm00001d014640_P035 | Maize | cytosol | 42.32 | 43.26 |
| Zm00001d036507_P003 | Maize | cytosol | 40.96 | 41.33 |
| KRH14812 | Soybean | nucleus | 32.99 | 32.92 |
| KRH73326 | Soybean | nucleus | 32.76 | 32.69 |
Protein Annotations
| EntrezGene:100790744 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EMBL:ACUP02006960 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 |
| EnsemblPlantsGene:GLYMA_11G175700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K7LQS9 | EnsemblPlants:KRH30315 | ProteinID:KRH30315 | ProteinID:KRH30315.1 |
| ProteinID:KRH30316.1 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296D279 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:19679119..19714327
Molecular Weight (calculated)
101547.0 Da
IEP (calculated)
7.904
GRAVY (calculated)
-0.670
Length
879 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSMNDSDRK RRHFSSLSPT PAAATAKKLP FLPVSEDKKL DIVVLQYQNQ KLTQKLETQK LEYAGLENRF SLLKESQKSY DSTLAVVKKS WEQLVDDLEL
101: CSERTRESSR KINSRFASIM EDGSPSTVQD VFLSRLMQTD ATECASTYNF ANQMEEHREI TTEKAKSILK NMVTAVNNLW VLMDGLHTAF LKKLPGGDLC
201: RQKLSSDLEV IVKNLRLEFS ELHSKHKSLA SEFQIQRDLN AKNKADLERL KGELASTVKE LEESNHKLAT LKAERDAAKG VLPLLNVGST HIPSDKIKDK
301: QKDLQDMEST LKELLDQGSA RLMELKSLHE ERIRILQQLC DLQNTLKNLK CITSSHAFQL VRDQIEKSKA EVLEYQALYE KLQVEKDNLA WREREWYIKN
401: DLADVFQRSV AVSDFRVADL RFEIQKKIEE RYVIENKLKE EARGPGRKQI IAEFKSLVSS FPDEMGSMQI QLRKYKESAS DIHSLRADVK SVSSILDRKV
501: KECDVFSVRS AGQLAEIKRL LGVVQDLRES ERDLKLILVM FRRESIDSRV VMDAREAEYR AWARVQSLKS SLDEHNLEHR VKTANEAEAR SQQKLATAEA
601: EIADMRQKLE DSKRQMCDLS DVLKSKNKQN ENYMSEIESI GQAYDDMQTQ NQHLLQQITE RDDYNIKLVL EGVRARQKQD SLLMEKRVIE HEIQQANISL
701: NVYDVKATRI EDQLKFCLDQ LQKLAEDKLQ SSVTLENTQR RLSDVRRQSQ QVRDTVVEMQ SKIGSNRVTC MELQVELEKE RFAKKRVEED LEVARRKFTR
801: LKEQNEGSSV TEKLQEELEE YRDIIKCSIC QDRAKEVVIT KCYHLFCYSC IQKVAGSRHR KCPQCSTSFG ANDVKSVYL
101: CSERTRESSR KINSRFASIM EDGSPSTVQD VFLSRLMQTD ATECASTYNF ANQMEEHREI TTEKAKSILK NMVTAVNNLW VLMDGLHTAF LKKLPGGDLC
201: RQKLSSDLEV IVKNLRLEFS ELHSKHKSLA SEFQIQRDLN AKNKADLERL KGELASTVKE LEESNHKLAT LKAERDAAKG VLPLLNVGST HIPSDKIKDK
301: QKDLQDMEST LKELLDQGSA RLMELKSLHE ERIRILQQLC DLQNTLKNLK CITSSHAFQL VRDQIEKSKA EVLEYQALYE KLQVEKDNLA WREREWYIKN
401: DLADVFQRSV AVSDFRVADL RFEIQKKIEE RYVIENKLKE EARGPGRKQI IAEFKSLVSS FPDEMGSMQI QLRKYKESAS DIHSLRADVK SVSSILDRKV
501: KECDVFSVRS AGQLAEIKRL LGVVQDLRES ERDLKLILVM FRRESIDSRV VMDAREAEYR AWARVQSLKS SLDEHNLEHR VKTANEAEAR SQQKLATAEA
601: EIADMRQKLE DSKRQMCDLS DVLKSKNKQN ENYMSEIESI GQAYDDMQTQ NQHLLQQITE RDDYNIKLVL EGVRARQKQD SLLMEKRVIE HEIQQANISL
701: NVYDVKATRI EDQLKFCLDQ LQKLAEDKLQ SSVTLENTQR RLSDVRRQSQ QVRDTVVEMQ SKIGSNRVTC MELQVELEKE RFAKKRVEED LEVARRKFTR
801: LKEQNEGSSV TEKLQEELEE YRDIIKCSIC QDRAKEVVIT KCYHLFCYSC IQKVAGSRHR KCPQCSTSFG ANDVKSVYL
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.