Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G14400.1 | KRH14812 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | KRH73326 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | KRH30315 | AT2G44950.1 | 18849490 |
| AT1G14400.1 | KRH75261 | AT2G44950.1 | 18849490 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45858 | Soybean | mitochondrion, nucleus | 84.73 | 73.03 |
| KRH56939 | Soybean | mitochondrion, nucleus | 84.73 | 73.03 |
| KRH63396 | Soybean | mitochondrion, nucleus | 84.73 | 73.03 |
| KRH03443 | Soybean | mitochondrion, nucleus | 83.97 | 72.37 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 83.21 | 71.71 |
| KRH69329 | Soybean | mitochondrion | 83.21 | 71.71 |
| Bra026582.1-P | Field mustard | mitochondrion, nucleus | 82.44 | 71.05 |
| Bra026833.1-P | Field mustard | mitochondrion, nucleus | 82.44 | 71.05 |
| Bra024808.1-P | Field mustard | mitochondrion, nucleus | 82.44 | 71.05 |
| Bra017410.1-P | Field mustard | mitochondrion, nucleus | 82.44 | 71.05 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 82.44 | 71.05 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 82.44 | 71.05 |
| Bra026222.1-P | Field mustard | mitochondrion, nucleus | 81.68 | 70.39 |
| KRH74802 | Soybean | mitochondrion | 81.68 | 70.39 |
| CDY39315 | Canola | mitochondrion | 80.15 | 69.08 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 80.15 | 69.08 |
| Solyc02g067420.2.1 | Tomato | nucleus | 79.39 | 68.42 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 77.86 | 67.11 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 80.15 | 64.81 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 80.15 | 64.81 |
| KRH54510 | Soybean | cytosol, nucleus, plastid | 56.49 | 63.79 |
| Bra016704.1-P | Field mustard | nucleus | 72.52 | 62.5 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 83.21 | 54.5 |
| CDX84034 | Canola | nucleus | 42.75 | 52.34 |
| Bra016703.1-P | Field mustard | nucleus | 82.44 | 51.43 |
| CDX96859 | Canola | mitochondrion | 72.52 | 50.26 |
| HORVU3Hr1G020470.1 | Barley | plastid | 80.15 | 46.26 |
| KRH33057 | Soybean | cytosol, nucleus, peroxisome | 39.69 | 35.14 |
| KRH68874 | Soybean | cytosol | 38.17 | 33.78 |
| KRH40705 | Soybean | cytosol | 38.17 | 33.78 |
| KRH64511 | Soybean | cytosol | 38.17 | 33.78 |
| KRH15985 | Soybean | cytosol | 38.17 | 33.78 |
| KRH53428 | Soybean | cytosol | 38.17 | 33.78 |
| KRH18135 | Soybean | cytosol | 38.17 | 33.56 |
| KRH45376 | Soybean | cytosol | 37.4 | 33.11 |
| KRH30665 | Soybean | cytosol | 37.4 | 33.11 |
| KRH72837 | Soybean | cytosol | 37.4 | 33.11 |
| KRG98118 | Soybean | cytosol | 37.4 | 33.11 |
| KRH29288 | Soybean | cytosol | 37.4 | 33.11 |
| KRH24311 | Soybean | cytosol | 37.4 | 33.11 |
| KRH17206 | Soybean | cytosol | 37.4 | 33.11 |
| KRH07671 | Soybean | cytosol | 24.43 | 32.99 |
| KRH07669 | Soybean | cytosol, nucleus, peroxisome | 36.64 | 32.43 |
| KRH00486 | Soybean | cytosol | 38.17 | 31.65 |
| KRH27335 | Soybean | endoplasmic reticulum | 35.11 | 30.46 |
| KRH55097 | Soybean | endoplasmic reticulum | 35.11 | 30.07 |
| KRH26227 | Soybean | cytosol | 35.11 | 30.07 |
| KRH21984 | Soybean | endoplasmic reticulum, nucleus | 35.11 | 30.07 |
| KRG89662 | Soybean | endoplasmic reticulum | 33.59 | 26.35 |
| KRH42820 | Soybean | plastid | 31.3 | 23.3 |
Protein Annotations
| MapMan:19.2.2.1.4 | Gene3D:3.10.110.10 | UniProt:A0A0R0EZF0 | EMBL:ACUP02010978 | EnsemblPlantsGene:GLYMA_18G124600 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | EnsemblPlants:KRG99148 | ProteinID:KRG99148 |
| ProteinID:KRG99148.1 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF5 |
| MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 | TMHMM:TMhelix | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0006ED6484 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:16239780..16241762
Molecular Weight (calculated)
14951.3 Da
IEP (calculated)
8.220
GRAVY (calculated)
-0.013
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ VIVIHLIFQN CIKTILMLKM I
101: DVAAILTSIQ VIVIHLIFQN CIKTILMLKM I
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Arabidopsis Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.