Factsheet for PGSC0003DMT400017857

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067420.2.1	Tomato	nucleus	97.37	97.37
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	92.11	92.11
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	91.45	91.45
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	91.45	91.45
Bra026222.1-P	Field mustard	mitochondrion, nucleus	90.79	90.79
AT2G02760.2	Thale cress	mitochondrion, nucleus	90.13	90.13
Bra024808.1-P	Field mustard	mitochondrion, nucleus	90.13	90.13
Bra026582.1-P	Field mustard	mitochondrion, nucleus	90.13	90.13
Bra017410.1-P	Field mustard	mitochondrion, nucleus	89.47	89.47
CDY39315	Canola	mitochondrion	89.47	89.47
AT1G14400.1	Thale cress	mitochondrion, nucleus	88.82	88.82
TraesCS3B01G131500.2	Wheat	nucleus	88.82	88.82
Bra026833.1-P	Field mustard	mitochondrion, nucleus	88.82	88.82
TraesCS3D01G114600.3	Wheat	mitochondrion	88.82	83.33
TraesCS3A01G112600.1	Wheat	mitochondrion	88.82	83.33
Bra016704.1-P	Field mustard	nucleus	79.61	79.61
KRG99148	Soybean	mitochondrion	67.11	77.86
CDX84034	Canola	nucleus	54.61	77.57
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	92.76	70.5
Bra016703.1-P	Field mustard	nucleus	88.82	64.29
CDX96859	Canola	mitochondrion	78.29	62.96
HORVU3Hr1G020470.1	Barley	plastid	88.82	59.47
PGSC0003DMT400084207	Potato	cytosol	43.42	44.59
PGSC0003DMT400057302	Potato	cytosol	43.42	44.59
PGSC0003DMT400009229	Potato	nucleus	42.76	43.92
PGSC0003DMT400049914	Potato	cytosol	42.76	43.92
PGSC0003DMT400032059	Potato	cytosol	42.76	43.92
PGSC0003DMT400023419	Potato	cytosol	42.76	43.92
PGSC0003DMT400014816	Potato	cytosol	42.76	43.92
PGSC0003DMT400078296	Potato	cytosol	42.11	43.24
PGSC0003DMT400000272	Potato	cytosol	42.11	43.24
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	40.13	41.22
PGSC0003DMT400012799	Potato	mitochondrion	42.11	38.1
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	42.11	36.57
PGSC0003DMT400032251	Potato	cytosol	35.53	35.29
PGSC0003DMT400054795	Potato	cytosol	34.87	34.64

Protein Annotations

EntrezGene:102577553	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:AB690310	ProteinID:ABA46759	ProteinID:ABA46759.1
ProteinID:BAM28647	ProteinID:BAM28647.1	EMBL:DQ200366	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000608	InterPro:IPR016135	RefSeq:NP_001275180.1	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG401006935	PGSC:PGSC0003DMG401006935
EnsemblPlants:PGSC0003DMT400017857	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8	UniProt:Q3HRZ2
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00005C501E
RefSeq:XP_006357119.1	:	:	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG401006935]

Coordinates

chr2:-:25945963..25950226

Molecular Weight (calculated)

17187.2 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.539

Length

152 amino acids

Sequence
(BLAST)

001: MSTAAKKRLM RDFKRLQQDP PAGISGAPHD SNIMLWNAVI FGPDDTAWDG GTFKMTLQFS EDYPNKPPKV HFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLSDPNPNS PANSEAARLF SENKRDYNRK VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.