Factsheet for PGSC0003DMT400054795

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35126	Canola	cytosol	99.35	99.35
Solyc10g007260.2.1	Tomato	plastid	99.35	99.35
Bra026018.1-P	Field mustard	cytosol	99.35	99.35
CDX81788	Canola	cytosol	99.35	99.35
CDY40025	Canola	cytosol	98.69	98.69
CDY54372	Canola	cytosol	98.69	98.69
KRH21984	Soybean	endoplasmic reticulum, nucleus	98.69	98.69
KRH26227	Soybean	cytosol	98.69	98.69
KRH55097	Soybean	endoplasmic reticulum	98.69	98.69
TraesCS3D01G271400.1	Wheat	cytosol	98.69	98.69
CDX83936	Canola	cytosol	98.69	98.69
TraesCS3B01G305500.1	Wheat	mitochondrion	98.69	98.69
TraesCS3A01G271800.1	Wheat	cytosol	98.69	98.69
Bra026700.1-P	Field mustard	cytosol	98.69	98.69
Bra016626.1-P	Field mustard	cytosol	98.69	98.69
PGSC0003DMT400032251	Potato	cytosol	98.69	98.69
AT1G78870.2	Thale cress	cytosol	98.04	98.04
CDX87428	Canola	cytosol	98.04	98.04
CDX96802	Canola	cytosol	98.04	98.04
CDY26882	Canola	cytosol	92.81	97.93
Bra035071.1-P	Field mustard	cytosol	88.89	97.84
Bra008383.1-P	Field mustard	cytosol	97.39	97.39
CDX88485	Canola	cytosol	97.39	97.39
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	97.39	97.39
CDY14587	Canola	cytosol	97.39	96.75
EES03421	Sorghum	cytosol	96.73	96.73
TraesCS1A01G392400.1	Wheat	cytosol	96.73	96.73
TraesCS1D01G400600.1	Wheat	cytosol	96.73	96.73
KXG35379	Sorghum	cytosol	94.77	94.77
CDY57941	Canola	cytosol	95.42	94.19
Zm00001d009552_P002	Maize	cytosol	97.39	93.71
TraesCS5B01G179700.1	Wheat	cytosol	93.46	93.46
TraesCS5A01G181700.1	Wheat	cytosol	93.46	93.46
TraesCS5D01G186100.1	Wheat	cytosol	93.46	93.46
AT1G16890.3	Thale cress	cytosol	98.69	93.21
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	93.46	92.26
GSMUA_Achr4P31050_001	Banana	cytosol	45.75	92.11
Zm00001d038995_P001	Maize	cytosol	97.39	91.41
VIT_19s0014g01460.t01	Wine grape	cytosol	89.54	88.39
Zm00001d043905_P003	Maize	cytosol	96.73	87.57
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.25	87.37
CDX79272	Canola	cytosol	95.42	85.88
HORVU1Hr1G086610.1	Barley	cytosol, plastid	96.73	85.06
HORVU1Hr1G086480.1	Barley	mitochondrion	94.12	75.0
HORVU3Hr1G061790.1	Barley	cytosol	98.69	74.38
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
Zm00001d011565_P002	Maize	cytosol, mitochondrion	96.08	73.87
TraesCS1B01G420600.1	Wheat	vacuole	83.66	62.44
PGSC0003DMT400078296	Potato	cytosol	47.71	49.32
PGSC0003DMT400000272	Potato	cytosol	47.06	48.65
PGSC0003DMT400084207	Potato	cytosol	46.41	47.97
PGSC0003DMT400023419	Potato	cytosol	46.41	47.97
PGSC0003DMT400057302	Potato	cytosol	46.41	47.97
PGSC0003DMT400014816	Potato	cytosol	45.75	47.3
PGSC0003DMT400049914	Potato	cytosol	45.75	47.3
PGSC0003DMT400032059	Potato	cytosol	45.1	46.62
PGSC0003DMT400009229	Potato	nucleus	45.1	46.62
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	45.1	46.62
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	47.71	41.71
PGSC0003DMT400012799	Potato	mitochondrion	45.1	41.07
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	36.6	36.84
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	36.6	36.84
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	35.95	36.18
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	34.64	34.87
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	36.6	28.0

Protein Annotations

EntrezGene:102586208	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009987	GO:GO:0010039
GO:GO:0010053	GO:GO:0016020	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0030154
InterPro:IPR000608	InterPro:IPR016135	UniProt:M1BWW1	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400021267	PGSC:PGSC0003DMG400021267
EnsemblPlants:PGSC0003DMT400054795	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000294EC97	RefSeq:XP_006360049.1

Description

Ubiquitin-conjugating enzyme E2 36 [Source:PGSC_GENE;Acc:PGSC0003DMG400021267]

Coordinates

chr10:-:2336553..2341951

Molecular Weight (calculated)

17190.8 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.303

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWARLYA SGA

Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.