Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400065698 | |
| PGSC0003DMT400073576 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16740.1 | PGSC0003DMT400065698 | AT3G18710.1 | 21798944 |
| AT2G16740.1 | PGSC0003DMT400073576 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 95.95 | 95.95 |
| PGSC0003DMT400009229 | Potato | nucleus | 91.22 | 91.22 |
| GSMUA_Achr3P26650_001 | Banana | cytosol, mitochondrion, peroxisome | 88.51 | 88.51 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 87.84 | 87.84 |
| KRH29288 | Soybean | cytosol | 87.84 | 87.84 |
| Os02t0120600-01 | Rice | cytosol | 87.16 | 87.16 |
| KRH24311 | Soybean | cytosol | 87.16 | 87.16 |
| PGSC0003DMT400078296 | Potato | cytosol | 85.81 | 85.81 |
| PGSC0003DMT400023419 | Potato | cytosol | 85.81 | 85.81 |
| PGSC0003DMT400049914 | Potato | cytosol | 85.81 | 85.81 |
| GSMUA_Achr7P17820_001 | Banana | cytosol | 85.14 | 85.14 |
| PGSC0003DMT400000272 | Potato | cytosol | 85.14 | 85.14 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 85.14 | 84.56 |
| TraesCS6D01G069000.1 | Wheat | cytosol | 85.14 | 84.56 |
| TraesCS6A01G071100.1 | Wheat | cytosol | 85.14 | 84.56 |
| PGSC0003DMT400057302 | Potato | cytosol | 84.46 | 84.46 |
| PGSC0003DMT400084207 | Potato | cytosol | 84.46 | 84.46 |
| PGSC0003DMT400014816 | Potato | cytosol | 84.46 | 84.46 |
| KXG29317 | Sorghum | nucleus | 84.46 | 84.46 |
| Zm00001d053897_P001 | Maize | mitochondrion | 83.78 | 83.78 |
| AT2G16740.1 | Thale cress | cytosol | 83.78 | 83.78 |
| PGSC0003DMT400032059 | Potato | cytosol | 82.43 | 82.43 |
| CDY31408 | Canola | cytosol | 82.43 | 82.43 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 81.76 | 81.76 |
| CDY02238 | Canola | cytosol | 79.05 | 79.05 |
| Bra013049.1-P | Field mustard | cytosol | 79.05 | 79.05 |
| CDX89747 | Canola | cytosol | 78.38 | 78.38 |
| PGSC0003DMT400012799 | Potato | mitochondrion | 83.78 | 73.81 |
| PGSC0003DMT400053006 | Potato | golgi, nucleus, vacuole | 85.81 | 72.57 |
| Bra001995.1-P | Field mustard | cytosol | 81.08 | 66.67 |
| PGSC0003DMT400032251 | Potato | cytosol | 47.3 | 45.75 |
| PGSC0003DMT400054795 | Potato | cytosol | 46.62 | 45.1 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 41.22 | 40.13 |
| PGSC0003DMT400046771 | Potato | mitochondrion, nucleus | 40.54 | 39.47 |
| PGSC0003DMT400046571 | Potato | mitochondrion, nucleus | 40.54 | 39.47 |
| PGSC0003DMT400083067 | Potato | mitochondrion, nucleus | 39.86 | 38.82 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 39.86 | 29.5 |
Protein Annotations
| EntrezGene:102583693 | MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:M1C245 |
| PFAM:PF00179 | EnsemblPlantsGene:PGSC0003DMG400022555 | PGSC:PGSC0003DMG400022555 | EnsemblPlants:PGSC0003DMT400058107 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR24068 | PANTHER:PTHR24068:SF47 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000296BDDC | RefSeq:XP_006343355.1 | : | : | : |
Description
Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022555]
Coordinates
chr3:-:3422165..3424585
Molecular Weight (calculated)
16741.1 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.416
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRIHKEL RELQRDPPTS CSAGPVAQDM FHWQATIIGP NDSPFAGGVF QVAIHFPPDY PFKPPKVAFK TKVFHPNINN NGNICLDILK DQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHLYKTD RQKYESVARN WTQKYAMN
101: KVLLSICSLL TDPNPDDPLV PEIAHLYKTD RQKYESVARN WTQKYAMN
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.