Factsheet for PGSC0003DMT400023419

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007470.2.1	Tomato	cytosol	100.0	100.0
KRH53428	Soybean	cytosol	99.32	99.32
KRH64511	Soybean	cytosol	99.32	99.32
KRH15985	Soybean	cytosol	98.65	98.65
KRH18135	Soybean	cytosol	98.65	97.99
GSMUA_Achr10P...	Banana	cytosol	97.97	97.97
PGSC0003DMT400049914	Potato	cytosol	97.3	97.3
PGSC0003DMT400000272	Potato	cytosol	97.3	97.3
PGSC0003DMT400078296	Potato	cytosol	96.62	96.62
CDY25571	Canola	cytosol	96.62	96.62
CDY34409	Canola	cytosol	96.62	96.62
PGSC0003DMT400084207	Potato	cytosol	95.95	95.95
GSMUA_Achr4P02490_001	Banana	cytosol	95.95	95.95
PGSC0003DMT400032059	Potato	cytosol	95.95	95.95
PGSC0003DMT400014816	Potato	cytosol	95.95	95.95
AT5G41700.4	Thale cress	cytosol, mitochondrion, peroxisome	95.27	94.63
PGSC0003DMT400057302	Potato	cytosol	93.24	93.24
PGSC0003DMT400009229	Potato	nucleus	89.19	89.19
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	85.81	85.81
PGSC0003DMT400012799	Potato	mitochondrion	96.62	85.12
Bra027749.1-P	Field mustard	nucleus	86.49	84.21
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	96.62	81.71
CDY08368	Canola	cytosol	85.81	79.87
AT1G64230.5	Thale cress	cytosol	95.95	74.74
CDY38184	Canola	cytosol	87.16	71.67
PGSC0003DMT400032251	Potato	cytosol	48.65	47.06
PGSC0003DMT400054795	Potato	cytosol	47.97	46.41
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	44.59	43.42
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	43.92	42.76
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	43.92	42.76
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	43.24	42.11
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	43.92	32.5

Protein Annotations

EntrezGene:102591564	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	ProteinID:AFW90582	ProteinID:AFW90582.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608
InterPro:IPR016135	EMBL:JX576226	UniProt:K7VPB9	RefSeq:NP_001274980.1	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400009069
PGSC:PGSC0003DMG400009069	EnsemblPlants:PGSC0003DMT400023419	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276814B
RefSeq:XP_006350599.1	:	:	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009069]

Coordinates

chr3:-:49005619..49009548

Molecular Weight (calculated)

16578.0 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.349

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT4G27960.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG

Arabidopsis Description

UBC9Ubiquitin conjugating enzyme 9 [Source:UniProtKB/TrEMBL;Acc:F4JKF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.