Factsheet for PGSC0003DMT400057302

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066080.2.1	Tomato	cytosol	97.97	97.97
Bra027688.1-P	Field mustard	cytosol	70.95	94.59
PGSC0003DMT400023419	Potato	cytosol	93.24	93.24
PGSC0003DMT400078296	Potato	cytosol	93.24	93.24
PGSC0003DMT400000272	Potato	cytosol	93.24	93.24
HORVU2Hr1G118240.5	Barley	cytosol	80.41	92.97
PGSC0003DMT400084207	Potato	cytosol	92.57	92.57
PGSC0003DMT400049914	Potato	cytosol	92.57	92.57
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	91.89	91.89
KRH33057	Soybean	cytosol, nucleus, peroxisome	91.89	91.89
PGSC0003DMT400014816	Potato	cytosol	91.22	91.22
PGSC0003DMT400032059	Potato	cytosol	90.54	90.54
GSMUA_Achr6P36250_001	Banana	nucleus	90.54	90.54
TraesCS4D01G067200.1	Wheat	plastid	65.54	86.61
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	84.46	84.46
PGSC0003DMT400009229	Potato	nucleus	83.78	83.78
TraesCS3A01G487000.1	Wheat	cytosol	58.78	82.86
PGSC0003DMT400012799	Potato	mitochondrion	91.22	80.36
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	93.24	78.86
TraesCS4A01G244100.1	Wheat	peroxisome	68.92	78.46
TraesCS4A01G246700.1	Wheat	peroxisome	68.24	77.69
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	69.59	76.3
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	72.97	75.52
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	89.86	63.33
PGSC0003DMT400054795	Potato	cytosol	47.97	46.41
PGSC0003DMT400032251	Potato	cytosol	47.97	46.41
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	45.27	44.08
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	44.59	43.42
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	44.59	43.42
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	43.92	42.76
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	44.59	33.0

Protein Annotations

EntrezGene:102595854	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1C0T1
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG402022253	PGSC:PGSC0003DMG402022253	EnsemblPlants:PGSC0003DMT400057302	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000295F188	RefSeq:XP_006346085.1	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG402022253]

Coordinates

chr7:+:56020334..56023593

Molecular Weight (calculated)

16439.7 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.343

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIQKEL KDLQKDPPAS CSAGPVGEDM FHWQATIMGP SDSPFSGGVF LVSIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.