CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027688.1-P	Field mustard	cytosol	69.59	92.79
KRH53428	Soybean	cytosol	92.57	92.57
KRH64511	Soybean	cytosol	92.57	92.57
KRH15985	Soybean	cytosol	92.57	92.57
KRH40705	Soybean	cytosol	91.89	91.89
KRH68874	Soybean	cytosol	91.89	91.89
PGSC0003DMT400057302	Potato	cytosol	91.89	91.89
KRH18135	Soybean	cytosol	91.89	91.28
KRH72837	Soybean	cytosol	91.22	91.22
Solyc07g066080.2.1	Tomato	cytosol	91.22	91.22
KRH17206	Soybean	cytosol	91.22	91.22
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	91.22	91.22
KRH24311	Soybean	cytosol	90.54	90.54
KRH45376	Soybean	cytosol	90.54	90.54
KRH30665	Soybean	cytosol	90.54	90.54
KRH29288	Soybean	cytosol	89.86	89.86
KRG98118	Soybean	cytosol	89.19	89.19
HORVU2Hr1G118240.5	Barley	cytosol	77.03	89.06
GSMUA_Achr6P36250_001	Banana	nucleus	87.84	87.84
KRH07669	Soybean	cytosol, nucleus, peroxisome	87.16	87.16
KRH00486	Soybean	cytosol	91.89	86.08
TraesCS4D01G067200.1	Wheat	plastid	63.51	83.93
TraesCS3A01G487000.1	Wheat	cytosol	58.11	81.9
KRH07671	Soybean	cytosol	52.03	79.38
TraesCS4A01G244100.1	Wheat	peroxisome	66.22	75.38
TraesCS4A01G246700.1	Wheat	peroxisome	65.54	74.62
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	67.57	74.07
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	70.27	72.73
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	87.84	61.9
KRG89662	Soybean	endoplasmic reticulum	56.76	50.3
KRH21984	Soybean	endoplasmic reticulum, nucleus	47.97	46.41
KRH26227	Soybean	cytosol	47.3	45.75
KRH55097	Soybean	endoplasmic reticulum	47.3	45.75
KRH54510	Soybean	cytosol, nucleus, plastid	35.81	45.69
KRH45858	Soybean	mitochondrion, nucleus	44.59	43.42
KRH56939	Soybean	mitochondrion, nucleus	44.59	43.42
KRH63396	Soybean	mitochondrion, nucleus	44.59	43.42
KRH69329	Soybean	mitochondrion	43.92	42.76
KRH03443	Soybean	mitochondrion, nucleus	43.92	42.76
KRH74802	Soybean	mitochondrion	43.24	42.11
KRH42820	Soybean	plastid	48.65	40.91
KRG99148	Soybean	mitochondrion	35.14	39.69
KRH27335	Soybean	endoplasmic reticulum	37.16	36.42

Protein Annotations

EntrezGene:100500665	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EMBL:ACUP02006277	EMBL:BT091610	UniProt:C6T2F1
EnsemblPlantsGene:GLYMA_10G096200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH33057	ProteinID:KRH33057	ProteinID:KRH33057.1
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF117	MetaCyc:PWY-7511
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001890C48

Description

hypothetical protein

Coordinates

chr10:-:14930665..14936448

Molecular Weight (calculated)

16542.8 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.357

Length

148 amino acids

Sequence
(BLAST)

001: MASKRITKEL KDLQQDPPVS CSAGPVGDDM FHWQATIMGP TDSPYAGGVF LVTIHFPPDY PFKPPKVSFR TKVFHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PDIAHMYKTD RDKYESTARS WTQKYAMS

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.