CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G78870.2	Thale cress	cytosol	99.35	99.35
Bra026018.1-P	Field mustard	cytosol	99.35	99.35
Solyc07g062570.2.1	Tomato	plastid	99.35	99.35
Solyc10g007260.2.1	Tomato	plastid	99.35	99.35
CDX81788	Canola	cytosol	99.35	99.35
CDY35126	Canola	cytosol	99.35	99.35
KRH55097	Soybean	endoplasmic reticulum	98.69	98.69
PGSC0003DMT400032251	Potato	cytosol	98.69	98.69
KRH26227	Soybean	cytosol	98.69	98.69
PGSC0003DMT400054795	Potato	cytosol	98.69	98.69
TraesCS3A01G271800.1	Wheat	cytosol	98.69	98.69
TraesCS3B01G305500.1	Wheat	mitochondrion	98.69	98.69
TraesCS3D01G271400.1	Wheat	cytosol	98.69	98.69
CDY54372	Canola	cytosol	98.69	98.69
CDY40025	Canola	cytosol	98.69	98.69
CDX83936	Canola	cytosol	98.69	98.69
Bra016626.1-P	Field mustard	cytosol	98.69	98.69
Bra026700.1-P	Field mustard	cytosol	98.69	98.69
CDX96802	Canola	cytosol	98.04	98.04
CDX87428	Canola	cytosol	98.04	98.04
CDY26882	Canola	cytosol	92.81	97.93
Bra035071.1-P	Field mustard	cytosol	88.89	97.84
CDX88485	Canola	cytosol	97.39	97.39
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	97.39	97.39
Bra008383.1-P	Field mustard	cytosol	97.39	97.39
CDY14587	Canola	cytosol	97.39	96.75
TraesCS1A01G392400.1	Wheat	cytosol	96.73	96.73
EES03421	Sorghum	cytosol	96.73	96.73
TraesCS1D01G400600.1	Wheat	cytosol	96.73	96.73
CDY57941	Canola	cytosol	96.73	95.48
KXG35379	Sorghum	cytosol	94.77	94.77
Zm00001d009552_P002	Maize	cytosol	97.39	93.71
TraesCS5A01G181700.1	Wheat	cytosol	93.46	93.46
TraesCS5B01G179700.1	Wheat	cytosol	93.46	93.46
TraesCS5D01G186100.1	Wheat	cytosol	93.46	93.46
AT1G16890.3	Thale cress	cytosol	98.69	93.21
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	93.46	92.26
Zm00001d038995_P001	Maize	cytosol	97.39	91.41
GSMUA_Achr4P31050_001	Banana	cytosol	45.1	90.79
VIT_19s0014g01460.t01	Wine grape	cytosol	90.2	89.03
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.9	88.42
Zm00001d043905_P003	Maize	cytosol	96.73	87.57
CDX79272	Canola	cytosol	96.73	87.06
HORVU1Hr1G086610.1	Barley	cytosol, plastid	96.73	85.06
HORVU1Hr1G086480.1	Barley	mitochondrion	94.12	75.0
KRH27335	Soybean	endoplasmic reticulum	73.86	74.83
HORVU3Hr1G061790.1	Barley	cytosol	98.69	74.38
Zm00001d011565_P002	Maize	cytosol, mitochondrion	96.08	73.87
TraesCS1B01G420600.1	Wheat	vacuole	83.66	62.44
KRG98118	Soybean	cytosol	47.06	48.65
KRH17206	Soybean	cytosol	47.06	48.65
KRH40705	Soybean	cytosol	47.06	48.65
KRH72837	Soybean	cytosol	47.06	48.65
KRH30665	Soybean	cytosol	47.06	48.65
KRH24311	Soybean	cytosol	46.41	47.97
KRH15985	Soybean	cytosol	46.41	47.97
KRH29288	Soybean	cytosol	46.41	47.97
KRH45376	Soybean	cytosol	46.41	47.97
KRH68874	Soybean	cytosol	46.41	47.97
KRH64511	Soybean	cytosol	46.41	47.97
KRH53428	Soybean	cytosol	46.41	47.97
KRH33057	Soybean	cytosol, nucleus, peroxisome	46.41	47.97
KRH18135	Soybean	cytosol	45.75	46.98
KRH07669	Soybean	cytosol, nucleus, peroxisome	45.1	46.62
KRH00486	Soybean	cytosol	47.06	45.57
KRH07671	Soybean	cytosol	28.1	44.33
KRH54510	Soybean	cytosol, nucleus, plastid	29.41	38.79
KRH69329	Soybean	mitochondrion	37.25	37.5
KRH45858	Soybean	mitochondrion, nucleus	37.25	37.5
KRH03443	Soybean	mitochondrion, nucleus	37.25	37.5
KRH56939	Soybean	mitochondrion, nucleus	37.25	37.5
KRH63396	Soybean	mitochondrion, nucleus	37.25	37.5
KRH74802	Soybean	mitochondrion	37.25	37.5
KRG99148	Soybean	mitochondrion	30.07	35.11
KRH42820	Soybean	plastid	36.6	31.82
KRG89662	Soybean	endoplasmic reticulum	28.1	25.75

Protein Annotations

EntrezGene:100805631	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02008374	EMBL:BT090715	EMBL:BT096783
UniProt:C6SZW2	EnsemblPlantsGene:GLYMA_13G270800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464
GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009987	GO:GO:0010039	GO:GO:0010053	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0030154	GO:GO:0031625	GO:GO:0046686	GO:GO:0061630	GO:GO:0070534
InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH21984	ProteinID:KRH21984	ProteinID:KRH21984.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000056EF25	:

Description

hypothetical protein

Coordinates

chr13:+:37275486..37279668

Molecular Weight (calculated)

17206.8 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.319

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G78870.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVD TAKEWTRLYA SGA

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.