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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • cytosol 4
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 golgi: 23128297
mitochondrion: 26136264
msms PMID: 26136264 doi
S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
gfp, msms PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G271400.1 Wheat cytosol 100.0 100.0
TraesCS3A01G271800.1 Wheat cytosol 100.0 100.0
Bra026018.1-P Field mustard cytosol 99.35 99.35
Bra026700.1-P Field mustard cytosol 99.35 99.35
Solyc10g007260.2.1 Tomato plastid 99.35 99.35
CDX81788 Canola cytosol 99.35 99.35
CDX83936 Canola cytosol 99.35 99.35
CDY54372 Canola cytosol 99.35 99.35
CDY35126 Canola cytosol 99.35 99.35
KRH21984 Soybean endoplasmic reticulum, nucleus 98.69 98.69
KRH26227 Soybean cytosol 98.69 98.69
KRH55097 Soybean endoplasmic reticulum 98.69 98.69
Os01t0673600-01 Rice extracellular, plasma membrane, plastid 98.69 98.69
CDY40025 Canola cytosol 98.69 98.69
PGSC0003DMT400032251 Potato cytosol 98.69 98.69
PGSC0003DMT400054795 Potato cytosol 98.69 98.69
CDX87428 Canola cytosol 98.69 98.69
Bra016626.1-P Field mustard cytosol 98.69 98.69
CDY26882 Canola cytosol 93.46 98.62
Bra035071.1-P Field mustard cytosol 89.54 98.56
Solyc07g062570.2.1 Tomato plastid 98.04 98.04
AT1G78870.2 Thale cress cytosol 98.04 98.04
EES03421 Sorghum cytosol 98.04 98.04
CDX96802 Canola cytosol 98.04 98.04
CDX88485 Canola cytosol 98.04 98.04
Bra008383.1-P Field mustard cytosol 98.04 98.04
CDY14587 Canola cytosol 98.04 97.4
CDY57941 Canola cytosol 96.08 94.84
TraesCS5B01G179700.1 Wheat cytosol 93.46 93.46
GSMUA_Achr4P31050_001 Banana cytosol 46.41 93.42
AT1G16890.3 Thale cress cytosol 98.69 93.21
Zm00001d043905_P003 Maize cytosol 98.04 88.76
VIT_19s0014g01460.t01 Wine grape cytosol 88.89 87.74
CDX79272 Canola cytosol 96.08 86.47
HORVU3Hr1G061790.1 Barley cytosol 100.0 75.37
Zm00001d011565_P002 Maize cytosol, mitochondrion 97.39 74.87
KRH27335 Soybean endoplasmic reticulum 72.55 73.51
TraesCS1B01G420600.1 Wheat vacuole 84.97 63.41
TraesCS3B01G266900.1 Wheat cytosol 47.71 49.66
TraesCS7B01G239300.1 Wheat cytosol, nucleus, peroxisome 47.71 49.32
TraesCS6B01G095200.1 Wheat cytosol 47.71 48.99
TraesCS3B01G374500.1 Wheat cytosol, nucleus, peroxisome 47.06 48.65
TraesCS5B01G174300.1 Wheat cytosol 47.06 48.65
TraesCS1B01G311400.1 Wheat cytosol, nucleus, peroxisome 47.06 48.65
TraesCS2B01G570100.1 Wheat cytosol 46.41 47.97
TraesCS3B01G131500.2 Wheat nucleus 38.56 38.82
TraesCS2B01G270000.2 Wheat nucleus 37.25 37.5
TraesCS1B01G140300.1 Wheat mitochondrion 37.25 37.5
TraesCS5B01G431100.1 Wheat mitochondrion, nucleus 37.25 37.5
TraesCS2B01G220200.1 Wheat plastid 41.18 32.81
Protein Annotations
EnsemblPlants:TraesCS3B01G305500.1EnsemblPlantsGene:TraesCS3B01G305500Gene3D:3.10.110.10InterPro:IPR000608InterPro:IPR016135InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDPANTHER:PTHR43902PANTHER:PTHR43902:SF4PFAM:PF00179PFscan:PS50127
ScanProsite:PS00183SMART:SM00212SUPFAM:SSF54495TIGR:cd00195MapMan:19.2.2.1.4:
Description
No Description!
Coordinates
chr3B:+:490883713..490887061
Molecular Weight (calculated)
17190.8 Da
IEP (calculated)
7.508
GRAVY (calculated)
-0.303
Length
153 amino acids
Sequence
(BLAST)
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPAQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA
Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA
Arabidopsis Description
UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.