Factsheet for Solyc10g007260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35126	Canola	cytosol	100.0	100.0
Bra026018.1-P	Field mustard	cytosol	100.0	100.0
CDX81788	Canola	cytosol	100.0	100.0
CDY40025	Canola	cytosol	99.35	99.35
CDY54372	Canola	cytosol	99.35	99.35
KRH21984	Soybean	endoplasmic reticulum, nucleus	99.35	99.35
KRH26227	Soybean	cytosol	99.35	99.35
KRH55097	Soybean	endoplasmic reticulum	99.35	99.35
PGSC0003DMT400054795	Potato	cytosol	99.35	99.35
CDX83936	Canola	cytosol	99.35	99.35
TraesCS3A01G271800.1	Wheat	cytosol	99.35	99.35
Bra026700.1-P	Field mustard	cytosol	99.35	99.35
Bra016626.1-P	Field mustard	cytosol	99.35	99.35
TraesCS3B01G305500.1	Wheat	mitochondrion	99.35	99.35
TraesCS3D01G271400.1	Wheat	cytosol	99.35	99.35
Solyc07g062570.2.1	Tomato	plastid	98.69	98.69
AT1G78870.2	Thale cress	cytosol	98.69	98.69
CDX87428	Canola	cytosol	98.69	98.69
CDX96802	Canola	cytosol	98.69	98.69
CDY26882	Canola	cytosol	93.46	98.62
Bra035071.1-P	Field mustard	cytosol	89.54	98.56
Bra008383.1-P	Field mustard	cytosol	98.04	98.04
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	98.04	98.04
CDX88485	Canola	cytosol	98.04	98.04
CDY14587	Canola	cytosol	98.04	97.4
TraesCS1A01G392400.1	Wheat	cytosol	97.39	97.39
TraesCS1D01G400600.1	Wheat	cytosol	97.39	97.39
EES03421	Sorghum	cytosol	97.39	97.39
KXG35379	Sorghum	cytosol	95.42	95.42
CDY57941	Canola	cytosol	96.08	94.84
Zm00001d009552_P002	Maize	cytosol	98.04	94.34
TraesCS5D01G186100.1	Wheat	cytosol	94.12	94.12
TraesCS5B01G179700.1	Wheat	cytosol	94.12	94.12
TraesCS5A01G181700.1	Wheat	cytosol	94.12	94.12
AT1G16890.3	Thale cress	cytosol	99.35	93.83
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	94.12	92.9
GSMUA_Achr4P31050_001	Banana	cytosol	45.75	92.11
Zm00001d038995_P001	Maize	cytosol	98.04	92.02
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.9	88.42
VIT_19s0014g01460.t01	Wine grape	cytosol	89.54	88.39
Zm00001d043905_P003	Maize	cytosol	97.39	88.17
CDX79272	Canola	cytosol	96.08	86.47
HORVU1Hr1G086610.1	Barley	cytosol, plastid	97.39	85.63
HORVU1Hr1G086480.1	Barley	mitochondrion	94.77	75.52
HORVU3Hr1G061790.1	Barley	cytosol	99.35	74.88
Zm00001d011565_P002	Maize	cytosol, mitochondrion	96.73	74.37
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
TraesCS1B01G420600.1	Wheat	vacuole	84.31	62.93
Solyc08g081950.2.1	Tomato	cytosol	39.87	51.26
Solyc06g007510.2.1	Tomato	cytosol	48.37	50.0
Solyc06g082600.2.1	Tomato	extracellular	48.37	50.0
Solyc10g011740.2.1	Tomato	cytosol	47.71	49.32
Solyc01g095490.2.1	Tomato	cytosol	47.71	49.32
Solyc03g007470.2.1	Tomato	cytosol	47.06	48.65
Solyc05g050230.2.1	Tomato	cytosol	47.06	48.65
Solyc12g056100.1.1	Tomato	cytosol	46.41	47.97
Solyc08g008220.2.1	Tomato	cytosol	46.41	47.97
Solyc02g083570.2.1	Tomato	cytosol	45.75	47.3
Solyc07g066080.2.1	Tomato	cytosol	45.75	47.3
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	45.1	46.62
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	37.25	37.5
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	37.25	37.5
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	36.6	36.84
Solyc02g067420.2.1	Tomato	nucleus	35.95	36.18
Solyc01g005840.2.1	Tomato	plastid	37.25	31.49

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	GO:GO:0070534	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4CXQ6	EMBL:KF496882
EMBL:KY246928	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4
SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc10g007260.2	EnsemblPlants:Solyc10g007260.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000009F139	:	:	:	:

Description

UBC13-2 [Source:UniProtKB/TrEMBL;Acc:K4CXQ6]

Coordinates

chr10:-:1673007..1678261

Molecular Weight (calculated)

17220.8 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.319

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.