CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31050_001	Banana	cytosol	44.37	88.16
AT1G78870.2	Thale cress	cytosol	74.83	73.86
Solyc07g062570.2.1	Tomato	plastid	74.83	73.86
KRH21984	Soybean	endoplasmic reticulum, nucleus	74.83	73.86
KRH26227	Soybean	cytosol	74.17	73.2
TraesCS5D01G186100.1	Wheat	cytosol	74.17	73.2
TraesCS5B01G179700.1	Wheat	cytosol	74.17	73.2
TraesCS5A01G181700.1	Wheat	cytosol	74.17	73.2
Solyc10g007260.2.1	Tomato	plastid	74.17	73.2
PGSC0003DMT400054795	Potato	cytosol	74.17	73.2
PGSC0003DMT400032251	Potato	cytosol	74.17	73.2
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	74.17	73.2
KRH55097	Soybean	endoplasmic reticulum	74.17	73.2
EES03421	Sorghum	cytosol	74.17	73.2
CDY40025	Canola	cytosol	74.17	73.2
CDX81788	Canola	cytosol	74.17	73.2
CDY35126	Canola	cytosol	74.17	73.2
Bra026018.1-P	Field mustard	cytosol	74.17	73.2
VIT_19s0014g01460.t01	Wine grape	cytosol	74.83	72.9
KXG35379	Sorghum	cytosol	73.51	72.55
CDY54372	Canola	cytosol	73.51	72.55
CDX83936	Canola	cytosol	73.51	72.55
Bra026700.1-P	Field mustard	cytosol	73.51	72.55
TraesCS1A01G392400.1	Wheat	cytosol	73.51	72.55
TraesCS1D01G400600.1	Wheat	cytosol	73.51	72.55
Bra016626.1-P	Field mustard	cytosol	73.51	72.55
TraesCS3D01G271400.1	Wheat	cytosol	73.51	72.55
TraesCS3B01G305500.1	Wheat	mitochondrion	73.51	72.55
TraesCS3A01G271800.1	Wheat	cytosol	73.51	72.55
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	74.17	72.26
CDX87428	Canola	cytosol	72.85	71.9
Bra008383.1-P	Field mustard	cytosol	72.85	71.9
CDX96802	Canola	cytosol	72.85	71.9
CDY14587	Canola	cytosol	72.85	71.43
CDX88485	Canola	cytosol	72.19	71.24
CDY26882	Canola	cytosol	68.21	71.03
Zm00001d009552_P002	Maize	cytosol	73.51	69.81
CDY57941	Canola	cytosol	71.52	69.68
Bra035071.1-P	Field mustard	cytosol	63.58	69.06
AT1G16890.3	Thale cress	cytosol	73.51	68.52
Zm00001d043905_P003	Maize	cytosol	76.16	68.05
Zm00001d038995_P001	Maize	cytosol	72.85	67.48
HORVU1Hr1G086610.1	Barley	cytosol, plastid	73.51	63.79
CDX79272	Canola	cytosol	71.52	63.53
Zm00001d011565_P002	Maize	cytosol, mitochondrion	73.51	55.78
HORVU1Hr1G086480.1	Barley	mitochondrion	70.86	55.73
HORVU3Hr1G061790.1	Barley	cytosol	73.51	54.68
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	31.13	49.47
TraesCS1B01G420600.1	Wheat	vacuole	60.26	44.39
KRH33057	Soybean	cytosol, nucleus, peroxisome	36.42	37.16
KRG98118	Soybean	cytosol	36.42	37.16
KRH40705	Soybean	cytosol	35.76	36.49
KRH15985	Soybean	cytosol	35.76	36.49
KRH17206	Soybean	cytosol	35.76	36.49
KRH24311	Soybean	cytosol	35.76	36.49
KRH29288	Soybean	cytosol	35.76	36.49
KRH72837	Soybean	cytosol	35.76	36.49
KRH45376	Soybean	cytosol	35.76	36.49
KRH68874	Soybean	cytosol	35.76	36.49
KRH64511	Soybean	cytosol	35.76	36.49
KRH53428	Soybean	cytosol	35.76	36.49
KRH30665	Soybean	cytosol	35.76	36.49
KRH18135	Soybean	cytosol	35.76	36.24
KRG99148	Soybean	mitochondrion	30.46	35.11
KRH07671	Soybean	cytosol	22.52	35.05
KRH07669	Soybean	cytosol, nucleus, peroxisome	33.77	34.46
KRH00486	Soybean	cytosol	35.76	34.18
KRH74802	Soybean	mitochondrion	31.79	31.58
KRH56939	Soybean	mitochondrion, nucleus	31.79	31.58
KRH03443	Soybean	mitochondrion, nucleus	31.79	31.58
KRH63396	Soybean	mitochondrion, nucleus	31.79	31.58
KRH45858	Soybean	mitochondrion, nucleus	31.79	31.58
KRH69329	Soybean	mitochondrion	31.79	31.58
KRH54510	Soybean	cytosol, nucleus, plastid	23.84	31.03
KRH42820	Soybean	plastid	31.13	26.7
KRG89662	Soybean	endoplasmic reticulum	27.81	25.15

Protein Annotations

EntrezGene:100306707	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02007798	EnsemblPlantsGene:GLYMA_12G228900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006301	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630	GO:GO:0070534	UniProt:I1LV57
InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH27335	ProteinID:KRH27335	ProteinID:KRH27335.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00023D0E4E	:

Description

hypothetical protein

Coordinates

chr12:-:38907362..38909342

Molecular Weight (calculated)

17434.6 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.166

Length

151 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LGIRTVLLRY ICLSSFTLVD VYLKRPIHFL KKCSKHQSAF QYQPVHGFYK M

Best Arabidopsis Sequence Match ( AT1G78870.3 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLRY MS

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.