CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63396	Soybean	mitochondrion, nucleus	100.0	100.0
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	99.34	99.34
KRH03443	Soybean	mitochondrion, nucleus	99.34	99.34
KRH45858	Soybean	mitochondrion, nucleus	99.34	99.34
KRH54510	Soybean	cytosol, nucleus, plastid	75.66	99.14
KRH69329	Soybean	mitochondrion	98.03	98.03
KRH74802	Soybean	mitochondrion	96.05	96.05
KRG99148	Soybean	mitochondrion	73.03	84.73
VIT_01s0026g01770.t01	Wine grape	plastid	100.0	79.58
KRH33057	Soybean	cytosol, nucleus, peroxisome	43.42	44.59
KRH53428	Soybean	cytosol	42.76	43.92
KRG98118	Soybean	cytosol	42.76	43.92
KRH68874	Soybean	cytosol	42.76	43.92
KRH64511	Soybean	cytosol	42.76	43.92
KRH15985	Soybean	cytosol	42.76	43.92
KRH40705	Soybean	cytosol	42.76	43.92
KRH24311	Soybean	cytosol	42.76	43.92
KRH18135	Soybean	cytosol	42.76	43.62
KRH30665	Soybean	cytosol	42.11	43.24
KRH45376	Soybean	cytosol	42.11	43.24
KRH17206	Soybean	cytosol	42.11	43.24
KRH29288	Soybean	cytosol	42.11	43.24
KRH72837	Soybean	cytosol	42.11	43.24
KRH07669	Soybean	cytosol, nucleus, peroxisome	42.11	43.24
KRH00486	Soybean	cytosol	42.76	41.14
KRH07671	Soybean	cytosol	25.0	39.18
KRH21984	Soybean	endoplasmic reticulum, nucleus	37.5	37.25
KRH55097	Soybean	endoplasmic reticulum	37.5	37.25
KRH26227	Soybean	cytosol	37.5	37.25
KRH27335	Soybean	endoplasmic reticulum	31.58	31.79
KRH42820	Soybean	plastid	31.58	27.27
KRG89662	Soybean	endoplasmic reticulum	28.95	26.35

Protein Annotations

EntrezGene:100499698	EntrezGene:100802605	EntrezGene:100803594	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02002680
EMBL:ACUP02002802	EMBL:BT089210	UniProt:C6SVL7	EnsemblPlantsGene:GLYMA_05G028800	GO:GO:0000166	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016574	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH56939	ProteinID:KRH56939	ProteinID:KRH56939.1
ProteinID:KRH63396.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8
MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0000572055	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2476686..2482768

Molecular Weight (calculated)

17349.5 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.576

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRR VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.