CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53428	Soybean	cytosol	98.66	99.32
KRH64511	Soybean	cytosol	98.66	99.32
Solyc03g007470.2.1	Tomato	cytosol	97.99	98.65
KRH15985	Soybean	cytosol	97.99	98.65
GSMUA_Achr10P...	Banana	cytosol	97.99	98.65
PGSC0003DMT400023419	Potato	cytosol	97.99	98.65
KRH68874	Soybean	cytosol	97.32	97.97
KRH40705	Soybean	cytosol	96.64	97.3
GSMUA_Achr4P02490_001	Banana	cytosol	95.97	96.62
KRH72837	Soybean	cytosol	95.97	96.62
KRH17206	Soybean	cytosol	95.97	96.62
KRH30665	Soybean	cytosol	95.3	95.95
CDY34409	Canola	cytosol	94.63	95.27
CDY25571	Canola	cytosol	94.63	95.27
KRG98118	Soybean	cytosol	93.96	94.59
KRH24311	Soybean	cytosol	93.29	93.92
AT5G41700.4	Thale cress	cytosol, mitochondrion, peroxisome	93.29	93.29
KRH29288	Soybean	cytosol	92.62	93.24
KRH45376	Soybean	cytosol	91.95	92.57
KRH33057	Soybean	cytosol, nucleus, peroxisome	91.28	91.89
KRH00486	Soybean	cytosol	96.64	91.14
KRH07669	Soybean	cytosol, nucleus, peroxisome	87.25	87.84
Bra027749.1-P	Field mustard	nucleus	85.91	84.21
CDY08368	Canola	cytosol	83.89	78.62
KRH07671	Soybean	cytosol	51.01	78.35
AT1G64230.5	Thale cress	cytosol	93.96	73.68
CDY38184	Canola	cytosol	85.23	70.56
KRG89662	Soybean	endoplasmic reticulum	61.74	55.09
KRH26227	Soybean	cytosol	47.65	46.41
KRH55097	Soybean	endoplasmic reticulum	47.65	46.41
KRH21984	Soybean	endoplasmic reticulum, nucleus	46.98	45.75
KRH54510	Soybean	cytosol, nucleus, plastid	35.57	45.69
KRH56939	Soybean	mitochondrion, nucleus	43.62	42.76
KRH63396	Soybean	mitochondrion, nucleus	43.62	42.76
KRH45858	Soybean	mitochondrion, nucleus	43.62	42.76
KRH69329	Soybean	mitochondrion	43.62	42.76
KRH74802	Soybean	mitochondrion	42.95	42.11
KRH03443	Soybean	mitochondrion, nucleus	42.95	42.11
KRH42820	Soybean	plastid	48.32	40.91
KRG99148	Soybean	mitochondrion	33.56	38.17
KRH27335	Soybean	endoplasmic reticulum	36.24	35.76

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EMBL:ACUP02008039	EnsemblPlantsGene:GLYMA_13G040500	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	UniProt:I1LX80	InterPro:IPR000608
InterPro:IPR016135	EnsemblPlants:KRH18135	ProteinID:KRH18135	ProteinID:KRH18135.1	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00023CF607	:	:

Description

hypothetical protein

Coordinates

chr13:-:12904066..12907723

Molecular Weight (calculated)

16674.1 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.319

Length

149 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVVAED MFHWQATIMG PPDSPYAGGV FLVTIHFPPD YPFKPPKVAF RTKVFHPNIN SNGSICLDIL KEQWSPALTI
101: SKVLLSICSL LTDPNPDDPL VPEIAHMYKT DRNKYESNAR SWTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.