Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34409 | Canola | cytosol | 75.26 | 96.62 |
| CDY25571 | Canola | cytosol | 75.26 | 96.62 |
| Solyc03g007470.2.1 | Tomato | cytosol | 74.74 | 95.95 |
| PGSC0003DMT400023419 | Potato | cytosol | 74.74 | 95.95 |
| KRH64511 | Soybean | cytosol | 74.21 | 95.27 |
| KRH53428 | Soybean | cytosol | 74.21 | 95.27 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 74.21 | 94.63 |
| KRH15985 | Soybean | cytosol | 73.68 | 94.59 |
| AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 73.68 | 94.59 |
| KRH18135 | Soybean | cytosol | 73.68 | 93.96 |
| GSMUA_Achr10P... | Banana | cytosol | 73.16 | 93.92 |
| GSMUA_Achr4P02490_001 | Banana | cytosol | 72.63 | 93.24 |
| AT3G08690.1 | Thale cress | cytosol | 70.53 | 90.54 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 67.37 | 86.49 |
| AT2G16740.1 | Thale cress | cytosol | 65.26 | 83.78 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 74.21 | 79.21 |
| AT3G08700.1 | Thale cress | cytosol | 60.0 | 76.51 |
| AT1G78870.2 | Thale cress | cytosol | 36.32 | 45.1 |
| AT1G36340.2 | Thale cress | cytosol | 35.26 | 43.51 |
| AT5G62540.1 | Thale cress | nucleus | 34.21 | 43.33 |
| AT1G16890.3 | Thale cress | cytosol | 36.84 | 43.21 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 33.16 | 41.45 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 32.63 | 40.79 |
| AT3G13550.1 | Thale cress | mitochondrion | 36.32 | 37.91 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EntrezGene:842728 | ProteinID:AEE34215.1 | ProteinID:AEE34216.1 | ArrayExpress:AT1G64230 |
| EnsemblPlantsGene:AT1G64230 | RefSeq:AT1G64230 | TAIR:AT1G64230 | RefSeq:AT1G64230-TAIR-G | EnsemblPlants:AT1G64230.5 | TAIR:AT1G64230.5 |
| UniProt:F4I5B8 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_001154446.1 | RefSeq:NP_001185308.1 |
| PFAM:PF00179 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF78 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC28 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001A7B2E6 | : | : |
Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
Coordinates
chr1:+:23833551..23835536
Molecular Weight (calculated)
21259.8 Da
IEP (calculated)
6.981
GRAVY (calculated)
-0.091
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAVDNASKL LVLIELEDCC RRFSNCSCIL LLEKSQDIAM AHVLLCPVAE DMFHWQATIM GPSDSPYSGG VFLVTIHFPP
101: DYPFKPPKVA FRTKVFHPNV NSNGSICLDI LKEQWSPALT ISKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRAKYESTA RSWTQKYAMG
101: DYPFKPPKVA FRTKVFHPNV NSNGSICLDI LKEQWSPALT ISKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRAKYESTA RSWTQKYAMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.