Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 4
- vacuole 3
- plasma membrane 3
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 81.46 | 97.97 |
AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 78.65 | 93.96 |
AT3G08690.1 | Thale cress | cytosol | 76.4 | 91.89 |
AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 73.03 | 87.84 |
AT2G16740.1 | Thale cress | cytosol | 71.91 | 86.49 |
AT3G08700.1 | Thale cress | cytosol | 66.85 | 79.87 |
AT1G64230.5 | Thale cress | cytosol | 79.21 | 74.21 |
AT1G78870.2 | Thale cress | cytosol | 39.89 | 46.41 |
AT1G36340.2 | Thale cress | cytosol | 38.76 | 44.81 |
AT5G62540.1 | Thale cress | nucleus | 37.64 | 44.67 |
AT1G16890.3 | Thale cress | cytosol | 40.45 | 44.44 |
AT1G14400.1 | Thale cress | mitochondrion, nucleus | 36.52 | 42.76 |
AT2G02760.2 | Thale cress | mitochondrion, nucleus | 35.96 | 42.11 |
AT3G13550.1 | Thale cress | mitochondrion | 39.33 | 38.46 |
Protein Annotations
MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EntrezGene:828909 | ProteinID:AEE85414.1 | ArrayExpress:AT4G27960 | EnsemblPlantsGene:AT4G27960 |
RefSeq:AT4G27960 | TAIR:AT4G27960 | RefSeq:AT4G27960-TAIR-G | EnsemblPlants:AT4G27960.2 | TAIR:AT4G27960.2 | UniProt:F4JKF3 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005524 |
GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_567791.1 |
PFAM:PF00179 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 |
ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF78 | SMART:SM00212 | SUPFAM:SSF54495 |
SignalP:SignalP-noTM | Symbol:UBC9 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0000162B36 |
Description
UBC9Ubiquitin conjugating enzyme 9 [Source:UniProtKB/TrEMBL;Acc:F4JKF3]
Coordinates
chr4:-:13915531..13917500
Molecular Weight (calculated)
20213.5 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.113
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFFFLIHLT IGLVFDCRVF NWNLDRGILE MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR
101: TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG
101: TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.