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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 5
  • extracellular 4
  • vacuole 3
  • plasma membrane 3
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G53300.1 Thale cress cytosol, nucleus, peroxisome 81.46 97.97
AT5G41700.4 Thale cress cytosol, mitochondrion, peroxisome 78.65 93.96
AT3G08690.1 Thale cress cytosol 76.4 91.89
AT5G56150.1 Thale cress cytosol, nucleus, peroxisome 73.03 87.84
AT2G16740.1 Thale cress cytosol 71.91 86.49
AT3G08700.1 Thale cress cytosol 66.85 79.87
AT1G64230.5 Thale cress cytosol 79.21 74.21
AT1G78870.2 Thale cress cytosol 39.89 46.41
AT1G36340.2 Thale cress cytosol 38.76 44.81
AT5G62540.1 Thale cress nucleus 37.64 44.67
AT1G16890.3 Thale cress cytosol 40.45 44.44
AT1G14400.1 Thale cress mitochondrion, nucleus 36.52 42.76
AT2G02760.2 Thale cress mitochondrion, nucleus 35.96 42.11
AT3G13550.1 Thale cress mitochondrion 39.33 38.46
Protein Annotations
MapMan:19.2.2.5.2Gene3D:3.10.110.10EntrezGene:828909ProteinID:AEE85414.1ArrayExpress:AT4G27960EnsemblPlantsGene:AT4G27960
RefSeq:AT4G27960TAIR:AT4G27960RefSeq:AT4G27960-TAIR-GEnsemblPlants:AT4G27960.2TAIR:AT4G27960.2UniProt:F4JKF3
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005524
GO:GO:0006464GO:GO:0006511GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016567GO:GO:0016740GO:GO:0019538InterPro:IPR000608InterPro:IPR016135RefSeq:NP_567791.1
PFAM:PF00179PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0025195PO:PO:0025281
ScanProsite:PS00183PFscan:PS50127PANTHER:PTHR24068PANTHER:PTHR24068:SF78SMART:SM00212SUPFAM:SSF54495
SignalP:SignalP-noTMSymbol:UBC9InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDUniParc:UPI0000162B36
Description
UBC9Ubiquitin conjugating enzyme 9 [Source:UniProtKB/TrEMBL;Acc:F4JKF3]
Coordinates
chr4:-:13915531..13917500
Molecular Weight (calculated)
20213.5 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.113
Length
178 amino acids
Sequence
(BLAST)
001: MFFFFLIHLT IGLVFDCRVF NWNLDRGILE MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR
101: TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.