Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035605.1-P | Field mustard | cytosol | 94.59 | 94.59 |
| Bra028946.1-P | Field mustard | cytosol | 85.81 | 90.71 |
| AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 88.51 | 88.51 |
| CDY51965 | Canola | cytosol | 87.84 | 87.84 |
| CDY17396 | Canola | cytosol | 87.84 | 87.84 |
| Bra002842.1-P | Field mustard | cytosol | 87.84 | 87.84 |
| CDY68877 | Canola | cytosol, mitochondrion | 94.59 | 87.5 |
| CDY06521 | Canola | cytosol, plastid | 94.59 | 87.5 |
| AT3G08690.1 | Thale cress | cytosol | 87.16 | 87.16 |
| CDX76970 | Canola | cytosol | 87.16 | 87.16 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 86.49 | 85.91 |
| AT2G16740.1 | Thale cress | cytosol | 83.78 | 83.78 |
| CDY11958 | Canola | cytosol | 93.92 | 80.35 |
| AT3G08700.1 | Thale cress | cytosol | 79.05 | 78.52 |
| CDY39254 | Canola | cytosol | 57.43 | 73.28 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 87.84 | 73.03 |
| AT1G64230.5 | Thale cress | cytosol | 86.49 | 67.37 |
| CDY36778 | Canola | cytosol | 93.24 | 63.59 |
| AT1G78870.2 | Thale cress | cytosol | 47.97 | 46.41 |
| AT1G36340.2 | Thale cress | cytosol | 47.3 | 45.45 |
| AT5G62540.1 | Thale cress | nucleus | 44.59 | 44.0 |
| AT1G16890.3 | Thale cress | cytosol | 47.3 | 43.21 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 43.24 | 42.11 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 42.57 | 41.45 |
| AT3G13550.1 | Thale cress | mitochondrion | 47.3 | 38.46 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | EntrezGene:835714 | UniProt:A0A178UMN8 | ProteinID:AED96726.1 | ArrayExpress:AT5G56150 |
| EnsemblPlantsGene:AT5G56150 | RefSeq:AT5G56150 | TAIR:AT5G56150 | RefSeq:AT5G56150-TAIR-G | EnsemblPlants:AT5G56150.1 | TAIR:AT5G56150.1 |
| EMBL:AY059806 | EMBL:AY081511 | EMBL:AY084220 | ProteinID:BAB09297.1 | EMBL:DQ027043 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_851198.1 |
| ProteinID:OAO94314.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005417 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF117 | UniProt:Q9FKT3 |
| SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC30 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI000005EA56 | : | : | : | : | : |
Description
UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
Coordinates
chr5:+:22729015..22731315
Molecular Weight (calculated)
16480.7 Da
IEP (calculated)
7.435
GRAVY (calculated)
-0.308
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.