Factsheet for Bra035605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	94.59	94.59
Bra028946.1-P	Field mustard	cytosol	88.51	93.57
CDY68877	Canola	cytosol, mitochondrion	100.0	92.5
CDY06521	Canola	cytosol, plastid	100.0	92.5
Bra027688.1-P	Field mustard	cytosol	68.92	91.89
Bra002842.1-P	Field mustard	cytosol	90.54	90.54
Bra003066.1-P	Field mustard	cytosol	90.54	90.54
Bra001347.1-P	Field mustard	cytosol	89.86	89.86
Bra041101.1-P	Field mustard	cytosol	89.86	89.86
Bra029076.1-P	Field mustard	cytosol	89.86	89.86
Bra022645.1-P	Field mustard	cytosol	89.86	89.86
Bra013049.1-P	Field mustard	cytosol	81.08	81.08
Bra027749.1-P	Field mustard	nucleus	78.38	76.32
Bra001995.1-P	Field mustard	cytosol	79.05	65.0
Bra032244.1-P	Field mustard	cytosol	51.35	50.67
Bra026700.1-P	Field mustard	cytosol	47.97	46.41
Bra026018.1-P	Field mustard	cytosol	47.3	45.75
Bra008383.1-P	Field mustard	cytosol	47.3	45.75
Bra016626.1-P	Field mustard	cytosol	46.62	45.1
Bra035071.1-P	Field mustard	cytosol	41.22	43.88
Bra017410.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra026833.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra026222.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra024808.1-P	Field mustard	mitochondrion, nucleus	43.24	42.11
Bra026582.1-P	Field mustard	mitochondrion, nucleus	43.24	42.11
Bra029252.1-P	Field mustard	mitochondrion, nucleus	42.57	42.0
Bra029711.1-P	Field mustard	nucleus	87.84	41.94
Bra016264.1-P	Field mustard	mitochondrion	42.57	41.45
Bra016704.1-P	Field mustard	nucleus	39.86	38.82
Bra027422.1-P	Field mustard	plastid	47.97	38.8
Bra016703.1-P	Field mustard	nucleus	43.92	30.95

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra035605	EnsemblPlants:Bra035605.1	EnsemblPlants:Bra035605.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4F3F5	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF117	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00025462A7	:	:	:	:	:

Description

AT5G56150 (E=2e-082) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase

Coordinates

chrA02:-:7341451..7342398

Molecular Weight (calculated)

16565.9 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.332

Length

148 amino acids

Sequence
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPVGDDM FHWQATIMGP SDSPFAGGVF LVSIHFPPDY PFKPPKVSFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RVKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G56150.1 )
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG

Arabidopsis Description

UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.