Factsheet for Bra029252.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66232	Canola	mitochondrion, nucleus	100.0	100.0
CDY30726	Canola	mitochondrion, nucleus	100.0	100.0
AT5G62540.1	Thale cress	nucleus	91.33	91.33
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	89.33	88.16
Bra016264.1-P	Field mustard	mitochondrion	89.33	88.16
Bra026582.1-P	Field mustard	mitochondrion, nucleus	88.0	86.84
Bra017410.1-P	Field mustard	mitochondrion, nucleus	88.0	86.84
Bra024808.1-P	Field mustard	mitochondrion, nucleus	88.0	86.84
Bra026222.1-P	Field mustard	mitochondrion, nucleus	87.33	86.18
Bra026833.1-P	Field mustard	mitochondrion, nucleus	86.67	85.53
Bra016704.1-P	Field mustard	nucleus	78.67	77.63
Bra016703.1-P	Field mustard	nucleus	86.67	61.9
Zm00001d007897_P002	Maize	mitochondrion	88.0	61.68
Bra022645.1-P	Field mustard	cytosol	44.67	45.27
Bra003066.1-P	Field mustard	cytosol	44.67	45.27
Bra029076.1-P	Field mustard	cytosol	44.67	45.27
Bra027688.1-P	Field mustard	cytosol	33.33	45.05
Bra001347.1-P	Field mustard	cytosol	44.0	44.59
Bra041101.1-P	Field mustard	cytosol	44.0	44.59
Bra028946.1-P	Field mustard	cytosol	40.67	43.57
Bra035605.1-P	Field mustard	cytosol	42.0	42.57
Bra013049.1-P	Field mustard	cytosol	40.67	41.22
Bra002842.1-P	Field mustard	cytosol	40.67	41.22
Bra027749.1-P	Field mustard	nucleus	40.0	39.47
Bra032244.1-P	Field mustard	cytosol	36.0	36.0
Bra026700.1-P	Field mustard	cytosol	36.67	35.95
Bra026018.1-P	Field mustard	cytosol	36.67	35.95
Bra008383.1-P	Field mustard	cytosol	36.0	35.29
Bra016626.1-P	Field mustard	cytosol	36.0	35.29
Bra001995.1-P	Field mustard	cytosol	40.67	33.89
Bra035071.1-P	Field mustard	cytosol	31.33	33.81
Bra027422.1-P	Field mustard	plastid	31.33	25.68
Bra029711.1-P	Field mustard	nucleus	44.0	21.29

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra029252	EnsemblPlants:Bra029252.1	EnsemblPlants:Bra029252.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4EKD5	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF7	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BA8296	:	:

Description

AT5G62540 (E=2e-082) UBC3 | UBC3 (ubiquitin-conjugating enzyme 3); ubiquitin-protein ligase

Coordinates

chrA02:+:26302388..26303336

Molecular Weight (calculated)

17133.3 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.482

Length

150 amino acids

Sequence
(BLAST)

001: MATPARKRLM WDFKRLQKDP PLGISGAPQD NNIMHWNALI FGPDDSPWDG GTFKLTLQFT EDYPNKPPVV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVSAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRK VMEIVEQSYA

Best Arabidopsis Sequence Match ( AT5G62540.1 )
(BLAST)

001: MTTPAKKRLM WDFKRLQKDP PVGISGAPQD NNIMHWNALI FGPEDTPWDG GTFKLTLHFT EDYPNKPPIV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAVLTSIQ SLLCDPNPDS PANAEAARLF SENKREYNRK VIEIVEQSYV

Arabidopsis Description

UBC3UBC3 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.