Factsheet for Bra003066.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35636	Canola	cytosol	100.0	100.0
CDY14388	Canola	cytosol	100.0	100.0
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	99.32	99.32
Bra029076.1-P	Field mustard	cytosol	99.32	99.32
Bra022645.1-P	Field mustard	cytosol	99.32	99.32
Solyc08g008220.2.1	Tomato	cytosol	97.97	97.97
Solyc05g050230.2.1	Tomato	cytosol	97.97	97.97
PGSC0003DMT400084207	Potato	cytosol	97.97	97.97
PGSC0003DMT400014816	Potato	cytosol	97.97	97.97
Bra027688.1-P	Field mustard	cytosol	72.3	96.4
Bra001347.1-P	Field mustard	cytosol	93.92	93.92
Bra041101.1-P	Field mustard	cytosol	93.92	93.92
Bra035605.1-P	Field mustard	cytosol	90.54	90.54
Bra028946.1-P	Field mustard	cytosol	82.43	87.14
Bra002842.1-P	Field mustard	cytosol	85.81	85.81
Bra027749.1-P	Field mustard	nucleus	85.81	83.55
Bra013049.1-P	Field mustard	cytosol	80.41	80.41
Bra001995.1-P	Field mustard	cytosol	81.76	67.22
Bra032244.1-P	Field mustard	cytosol	52.03	51.33
Bra026700.1-P	Field mustard	cytosol	49.32	47.71
Bra026018.1-P	Field mustard	cytosol	48.65	47.06
Bra008383.1-P	Field mustard	cytosol	48.65	47.06
Bra016626.1-P	Field mustard	cytosol	47.97	46.41
Bra035071.1-P	Field mustard	cytosol	43.24	46.04
Bra029252.1-P	Field mustard	mitochondrion, nucleus	45.27	44.67
Bra029711.1-P	Field mustard	nucleus	91.89	43.87
Bra017410.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026833.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026222.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026582.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra024808.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra016264.1-P	Field mustard	mitochondrion	43.24	42.11
Bra016704.1-P	Field mustard	nucleus	41.22	40.13
Bra027422.1-P	Field mustard	plastid	46.62	37.7
Bra016703.1-P	Field mustard	nucleus	44.59	31.43

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra003066	EnsemblPlants:Bra003066.1	EnsemblPlants:Bra003066.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4CFT4	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF78	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0001890C5F	:	:	:	:	:

Description

AT5G53300 (E=1e-085) UBC10 | UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase

Coordinates

chrA10:-:5512929..5514029

Molecular Weight (calculated)

16523.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.322

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G53300.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Arabidopsis Description

UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.