Factsheet for Bra028946.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035605.1-P	Field mustard	cytosol	93.57	88.51
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	90.71	85.81
Bra002842.1-P	Field mustard	cytosol	90.71	85.81
Bra027688.1-P	Field mustard	cytosol	67.14	84.68
Bra001347.1-P	Field mustard	cytosol	87.86	83.11
Bra029076.1-P	Field mustard	cytosol	87.86	83.11
Bra022645.1-P	Field mustard	cytosol	87.86	83.11
Bra003066.1-P	Field mustard	cytosol	87.14	82.43
Bra041101.1-P	Field mustard	cytosol	87.14	82.43
Bra013049.1-P	Field mustard	cytosol	80.71	76.35
Bra027749.1-P	Field mustard	nucleus	77.14	71.05
CDY39254	Canola	cytosol	58.57	70.69
CDY36778	Canola	cytosol	97.86	63.13
Bra001995.1-P	Field mustard	cytosol	79.29	61.67
Bra032244.1-P	Field mustard	cytosol	48.57	45.33
Bra026018.1-P	Field mustard	cytosol	45.71	41.83
Bra026700.1-P	Field mustard	cytosol	45.0	41.18
Bra016626.1-P	Field mustard	cytosol	45.0	41.18
Bra029252.1-P	Field mustard	mitochondrion, nucleus	43.57	40.67
Bra008383.1-P	Field mustard	cytosol	44.29	40.52
Bra029711.1-P	Field mustard	nucleus	87.86	39.68
Bra017410.1-P	Field mustard	mitochondrion, nucleus	42.86	39.47
Bra026222.1-P	Field mustard	mitochondrion, nucleus	42.86	39.47
Bra026833.1-P	Field mustard	mitochondrion, nucleus	42.86	39.47
Bra035071.1-P	Field mustard	cytosol	38.57	38.85
Bra024808.1-P	Field mustard	mitochondrion, nucleus	42.14	38.82
Bra016264.1-P	Field mustard	mitochondrion	42.14	38.82
Bra026582.1-P	Field mustard	mitochondrion, nucleus	42.14	38.82
Bra027422.1-P	Field mustard	plastid	48.57	37.16
Bra016704.1-P	Field mustard	nucleus	39.29	36.18
Bra016703.1-P	Field mustard	nucleus	42.86	28.57

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra028946	EnsemblPlants:Bra028946.1	EnsemblPlants:Bra028946.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4EJI0	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF117	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000253FDFD	:	:	:	:	:

Description

AT5G56150 (E=9e-075) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase

Coordinates

chrA03:-:5548611..5549769

Molecular Weight (calculated)

15501.5 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.354

Length

140 amino acids

Sequence
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPVGDDM FHWQATIMGP TDSPFSGGVF LVSIHFPPDY PFKPPKVSFR TKVYHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPGDPLV PEVAHTYKTD RSKYESTARS

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.