Factsheet for Bra041101.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027467.1-P
Bra029975.1-P
Bra033652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08690.1	Bra029975.1-P	AT3G49810.1	21798944
AT3G08690.1	Bra027467.1-P	AT5G42940.1	21798944
AT3G08690.1	Bra033652.1-P	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001347.1-P	Field mustard	cytosol	99.32	99.32
AT3G08690.1	Thale cress	cytosol	97.3	97.3
Bra029076.1-P	Field mustard	cytosol	93.92	93.92
Bra003066.1-P	Field mustard	cytosol	93.92	93.92
EES19701	Sorghum	cytosol	93.92	93.92
Bra022645.1-P	Field mustard	cytosol	93.92	93.92
TraesCS1A01G301600.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
HORVU0Hr1G002220.2	Barley	cytosol, nucleus, peroxisome	93.24	93.24
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
TraesCS1D01G301300.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
TraesCS3A01G342500.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
TraesCS3D01G336300.1	Wheat	cytosol, nucleus, peroxisome	93.24	93.24
HORVU3Hr1G080790.2	Barley	cytosol	93.24	91.39
Bra027688.1-P	Field mustard	cytosol	68.24	90.99
Bra035605.1-P	Field mustard	cytosol	89.86	89.86
Os01t0819400-00	Rice	cytosol	93.24	87.34
Bra028946.1-P	Field mustard	cytosol	82.43	87.14
Bra002842.1-P	Field mustard	cytosol	86.49	86.49
Zm00001d010618_P003	Maize	cytosol	93.92	85.28
Bra013049.1-P	Field mustard	cytosol	79.73	79.73
Bra027749.1-P	Field mustard	nucleus	81.08	78.95
Bra001995.1-P	Field mustard	cytosol	79.73	65.56
HORVU1Hr1G069530.1	Barley	cytosol, plastid	93.24	64.79
Bra032244.1-P	Field mustard	cytosol	53.38	52.67
Bra026700.1-P	Field mustard	cytosol	48.65	47.06
Bra026018.1-P	Field mustard	cytosol	48.65	47.06
Bra029711.1-P	Field mustard	nucleus	97.3	46.45
Bra008383.1-P	Field mustard	cytosol	47.97	46.41
Bra016626.1-P	Field mustard	cytosol	47.97	46.41
Bra035071.1-P	Field mustard	cytosol	42.57	45.32
Bra026222.1-P	Field mustard	mitochondrion, nucleus	45.27	44.08
Bra026833.1-P	Field mustard	mitochondrion, nucleus	45.27	44.08
Bra017410.1-P	Field mustard	mitochondrion, nucleus	45.27	44.08
Bra029252.1-P	Field mustard	mitochondrion, nucleus	44.59	44.0
Bra024808.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026582.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra016264.1-P	Field mustard	mitochondrion	42.57	41.45
GSMUA_Achr5P04210_001	Banana	cytosol	47.3	41.42
Bra016704.1-P	Field mustard	nucleus	41.89	40.79
Bra027422.1-P	Field mustard	plastid	47.97	38.8
Bra016703.1-P	Field mustard	nucleus	45.27	31.9

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra041101	EnsemblPlants:Bra041101.1	EnsemblPlants:Bra041101.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4FJ21	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF55	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000253ECC1	:	:	:	:	:

Description

AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase

Coordinates

chrScaffold000528:+:855..1973

Molecular Weight (calculated)

16551.9 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.373

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVSIHFPPDY PFKPPKVSFK TRVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KTKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT3G08690.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG

Arabidopsis Description

UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.