Factsheet for Os01t0819400-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0232600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08690.1	Os03t0232600-01	AT3G49810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19701	Sorghum	cytosol	93.04	99.32
HORVU0Hr1G002220.2	Barley	cytosol, nucleus, peroxisome	93.04	99.32
TraesCS1D01G301300.1	Wheat	cytosol, nucleus, peroxisome	93.04	99.32
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	93.04	99.32
TraesCS1A01G301600.1	Wheat	cytosol, nucleus, peroxisome	93.04	99.32
HORVU3Hr1G080790.2	Barley	cytosol	94.3	98.68
TraesCS3D01G336300.1	Wheat	cytosol, nucleus, peroxisome	92.41	98.65
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	92.41	98.65
TraesCS3A01G342500.1	Wheat	cytosol, nucleus, peroxisome	92.41	98.65
Os04t0667800-01	Rice	cytosol	89.87	95.95
AT3G08690.1	Thale cress	cytosol	87.97	93.92
Os02t0261100-01	Rice	cytosol	87.97	93.92
Bra001347.1-P	Field mustard	cytosol	87.34	93.24
Bra041101.1-P	Field mustard	cytosol	87.34	93.24
Os01t0658400-01	Rice	cytosol	86.08	92.52
Zm00001d010618_P003	Maize	cytosol	94.3	91.41
Os09t0293400-01	Rice	cytosol	83.54	89.19
Os02t0120600-01	Rice	cytosol	82.28	87.84
HORVU1Hr1G069530.1	Barley	cytosol, plastid	94.94	70.42
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	45.57	47.06
Bra029711.1-P	Field mustard	nucleus	85.44	43.55
GSMUA_Achr5P04210_001	Banana	cytosol	45.57	42.6
Os07t0166800-02	Rice	mitochondrion, nucleus	40.51	42.11
Os03t0791800-01	Rice	mitochondrion, nucleus	40.51	42.11
Os05t0182500-02	Rice	mitochondrion, nucleus	39.87	41.45
Os07t0577400-01	Rice	nucleus	50.0	39.11

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:A0A0P0V9Q4	ProteinID:BAS74958.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlantsGene:Os01g0819400	EnsemblPlants:Os01t0819400-00	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000393A0AE	:	:

Description

UBIQUITIN-CONJUGATING ENZYME 23Similar to Ubiquitin carrier protein. (Os01t0819400-00)

Coordinates

chr1:+:34917652..34919637

Molecular Weight (calculated)

17780.6 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.330

Length

158 amino acids

Sequence
(BLAST)

001: MLMQFKQELI MASKRILKEL KDLQKDPPTS CSAGPAGEDM FHWQATIMGP PDSPYAGGVF LVNIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK
101: EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RPKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT3G08690.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG

Arabidopsis Description

UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.