Factsheet for Os01t0673600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03421	Sorghum	cytosol	99.35	99.35
TraesCS3D01G271400.1	Wheat	cytosol	98.69	98.69
TraesCS3B01G305500.1	Wheat	mitochondrion	98.69	98.69
TraesCS3A01G271800.1	Wheat	cytosol	98.69	98.69
Solyc10g007260.2.1	Tomato	plastid	98.04	98.04
CDY54372	Canola	cytosol	98.04	98.04
CDY35126	Canola	cytosol	98.04	98.04
CDX83936	Canola	cytosol	98.04	98.04
CDX81788	Canola	cytosol	98.04	98.04
Bra026700.1-P	Field mustard	cytosol	98.04	98.04
Bra026018.1-P	Field mustard	cytosol	98.04	98.04
CDX87428	Canola	cytosol	97.39	97.39
PGSC0003DMT400054795	Potato	cytosol	97.39	97.39
CDY40025	Canola	cytosol	97.39	97.39
PGSC0003DMT400032251	Potato	cytosol	97.39	97.39
Bra016626.1-P	Field mustard	cytosol	97.39	97.39
KRH55097	Soybean	endoplasmic reticulum	97.39	97.39
KRH26227	Soybean	cytosol	97.39	97.39
KRH21984	Soybean	endoplasmic reticulum, nucleus	97.39	97.39
CDY26882	Canola	cytosol	92.16	97.24
Bra035071.1-P	Field mustard	cytosol	88.24	97.12
AT1G78870.2	Thale cress	cytosol	96.73	96.73
Solyc07g062570.2.1	Tomato	plastid	96.73	96.73
Bra008383.1-P	Field mustard	cytosol	96.73	96.73
CDX88485	Canola	cytosol	96.73	96.73
CDX96802	Canola	cytosol	96.73	96.73
CDY14587	Canola	cytosol	96.73	96.1
CDY57941	Canola	cytosol	94.77	93.55
GSMUA_Achr4P31050_001	Banana	cytosol	46.41	93.42
AT1G16890.3	Thale cress	cytosol	97.39	91.98
Zm00001d043905_P003	Maize	cytosol	98.04	88.76
VIT_19s0014g01460.t01	Wine grape	cytosol	88.24	87.1
CDX79272	Canola	cytosol	94.77	85.29
Zm00001d011565_P002	Maize	cytosol, mitochondrion	98.69	75.88
HORVU3Hr1G061790.1	Barley	cytosol	98.69	74.38
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
Os02t0120600-01	Rice	cytosol	48.37	50.0
Os01t0658400-01	Rice	cytosol	47.71	49.66
Os09t0293400-01	Rice	cytosol	47.71	49.32
Os04t0667800-01	Rice	cytosol	47.06	48.65
Os02t0261100-01	Rice	cytosol	46.41	47.97
Os01t0819400-00	Rice	cytosol	47.06	45.57
Os07t0166800-02	Rice	mitochondrion, nucleus	37.25	37.5
Os05t0182500-02	Rice	mitochondrion, nucleus	37.25	37.5
Os03t0791800-01	Rice	mitochondrion, nucleus	37.25	37.5
Os07t0577400-01	Rice	nucleus	38.56	29.21

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EntrezGene:4325905	EMBL:AK122067	ProteinID:BAB84382.1	ProteinID:BAC01179.1
ProteinID:BAF05748.1	ProteinID:BAS73632.1	ProteinID:EEE55162.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	GO:GO:0061630	GO:GO:0070534	EMBL:HQ013297	InterPro:IPR000608	InterPro:IPR016135
EnsemblPlantsGene:Os01g0673600	EnsemblPlants:Os01t0673600-01	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902
PANTHER:PTHR43902:SF4	UniProt:Q8W0I1	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00000ABCD2	RefSeq:XP_015621872.1	:	:	:

Description

Ubiquitin conjugating enzyme 13, Ubiquitin-conjugating enzyme 47Ubiquitin-conjugating enzyme, Error-free DNA damage tolerance, Regulation of abiotic stress and hormone responses (Os01t0673600-01)

Coordinates

chr1:-:27668585..27671611

Molecular Weight (calculated)

17160.7 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.286

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPAQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSDNIAKH WKANEAEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.