Factsheet for PGSC0003DMT400032251

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35126	Canola	cytosol	99.35	99.35
Solyc07g062570.2.1	Tomato	plastid	99.35	99.35
Bra026018.1-P	Field mustard	cytosol	99.35	99.35
CDX81788	Canola	cytosol	99.35	99.35
CDY40025	Canola	cytosol	98.69	98.69
CDY54372	Canola	cytosol	98.69	98.69
KRH21984	Soybean	endoplasmic reticulum, nucleus	98.69	98.69
KRH26227	Soybean	cytosol	98.69	98.69
KRH55097	Soybean	endoplasmic reticulum	98.69	98.69
TraesCS3D01G271400.1	Wheat	cytosol	98.69	98.69
CDX83936	Canola	cytosol	98.69	98.69
TraesCS3B01G305500.1	Wheat	mitochondrion	98.69	98.69
TraesCS3A01G271800.1	Wheat	cytosol	98.69	98.69
Bra026700.1-P	Field mustard	cytosol	98.69	98.69
Bra016626.1-P	Field mustard	cytosol	98.69	98.69
PGSC0003DMT400054795	Potato	cytosol	98.69	98.69
EES03421	Sorghum	cytosol	98.04	98.04
AT1G78870.2	Thale cress	cytosol	98.04	98.04
CDX87428	Canola	cytosol	98.04	98.04
CDX96802	Canola	cytosol	98.04	98.04
CDY26882	Canola	cytosol	92.81	97.93
Bra035071.1-P	Field mustard	cytosol	88.89	97.84
Bra008383.1-P	Field mustard	cytosol	97.39	97.39
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	97.39	97.39
CDX88485	Canola	cytosol	97.39	97.39
CDY14587	Canola	cytosol	97.39	96.75
TraesCS1A01G392400.1	Wheat	cytosol	96.73	96.73
TraesCS1D01G400600.1	Wheat	cytosol	96.73	96.73
KXG35379	Sorghum	cytosol	94.77	94.77
CDY57941	Canola	cytosol	95.42	94.19
TraesCS5A01G181700.1	Wheat	cytosol	94.12	94.12
TraesCS5B01G179700.1	Wheat	cytosol	94.12	94.12
TraesCS5D01G186100.1	Wheat	cytosol	94.12	94.12
Zm00001d009552_P002	Maize	cytosol	97.39	93.71
AT1G16890.3	Thale cress	cytosol	98.69	93.21
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	94.12	92.9
GSMUA_Achr4P31050_001	Banana	cytosol	45.75	92.11
Zm00001d038995_P001	Maize	cytosol	97.39	91.41
Zm00001d043905_P003	Maize	cytosol	98.04	88.76
VIT_19s0014g01460.t01	Wine grape	cytosol	88.89	87.74
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.25	87.37
CDX79272	Canola	cytosol	95.42	85.88
HORVU1Hr1G086610.1	Barley	cytosol, plastid	96.73	85.06
HORVU1Hr1G086480.1	Barley	mitochondrion	94.12	75.0
Zm00001d011565_P002	Maize	cytosol, mitochondrion	97.39	74.87
HORVU3Hr1G061790.1	Barley	cytosol	98.69	74.38
KRH27335	Soybean	endoplasmic reticulum	73.2	74.17
TraesCS1B01G420600.1	Wheat	vacuole	83.66	62.44
PGSC0003DMT400078296	Potato	cytosol	47.71	49.32
PGSC0003DMT400084207	Potato	cytosol	47.06	48.65
PGSC0003DMT400049914	Potato	cytosol	47.06	48.65
PGSC0003DMT400023419	Potato	cytosol	47.06	48.65
PGSC0003DMT400000272	Potato	cytosol	47.06	48.65
PGSC0003DMT400014816	Potato	cytosol	46.41	47.97
PGSC0003DMT400057302	Potato	cytosol	46.41	47.97
PGSC0003DMT400009229	Potato	nucleus	45.75	47.3
PGSC0003DMT400032059	Potato	cytosol	45.75	47.3
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	45.75	47.3
PGSC0003DMT400053006	Potato	golgi, nucleus, vacuole	47.71	41.71
PGSC0003DMT400012799	Potato	mitochondrion	45.75	41.67
PGSC0003DMT400083067	Potato	mitochondrion, nucleus	37.25	37.5
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	37.25	37.5
PGSC0003DMT400046571	Potato	mitochondrion, nucleus	36.6	36.84
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	35.29	35.53
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	37.25	28.5

Protein Annotations

EntrezGene:102604957	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	ProteinID:AFX66994	ProteinID:AFX66994.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	EMBL:JX683430	UniProt:K7X8C6	RefSeq:NP_001275211.1	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400012390
PGSC:PGSC0003DMG400012390	EnsemblPlants:PGSC0003DMT400032251	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002611F17

Description

Ubiquitin-conjugating enzyme E2 36 [Source:PGSC_GENE;Acc:PGSC0003DMG400012390]

Coordinates

chr7:+:52688515..52694128

Molecular Weight (calculated)

17248.9 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.303

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEVEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G16890.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.